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GrainGenes Marker Report: BCD141

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Locus
bcd141
Type
RFLP
SNP
Synonym
SynonymPOPA3_0081
Map
Physical-3B92.98
Wheat, Yr genes and QTL 3B65.7
Wheat_Yr_2021-3B140.16
[ Show Nearby Loci ]
Map Data
3B Physical
Wheat, Yr genes and QTL
Wheat, Yr Update, 2021
Probe
BCD141
Homology
AAF54122.1e-value: 5.4(AE003675) CG10272 gene product [Drosophila melanogaster]
T48615e-value: 1e-15hypothetical protein F18O22.210 - Arabidopsis thaliana
Remark
The RFLP marker was advanced to the POPA3 SNP collection.
Possible Orthologs
Xbcd141
Xbcd141-3A
Xbcd141-3B



Probe
BCD141
Locus
Xbcd141-3A
Xbcd141-3B
RI038D14
Xbcd141
bcd141
Synonym
SynonymHAR35_17539
HAR35_17540
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438875
BE438897
BCD141_WHE03G11.r1
BCD141_WHE03G11.s1
Polymorphism
BCD141 EcoRV
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
1
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD141 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
RI038D14
Probe
BCD141
Homology
AAF54122.1e-value: 5.4(AE003675) CG10272 gene product [Drosophila melanogaster]
T48615e-value: 1e-15hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
Xbcd141
Type
RFLP
Chromosome
3B
Map
Wheat-Composite2004-3B63
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD141
Homology
AAF54122.1e-value: 5.4(AE003675) CG10272 gene product [Drosophila melanogaster]
T48615e-value: 1e-15hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd141
Xbcd141-3A
Xbcd141-3B



Locus for Probe
Xbcd141-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
Map
3A, CNN x WI88.1
Tturgidum-JKxC2-3A92.7
[ Show Nearby Loci ]
In QTL
Qkps.unl-3A.2
QSpsm.sha-3A
Map Data
3A, CNN x WI
T. turgidum, JK x Cham1, 2
Probe
BCD141
Homology
AAF54122.1e-value: 5.4(AE003675) CG10272 gene product [Drosophila melanogaster]
T48615e-value: 1e-15hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd141
Xbcd141
Xbcd141-3B



Locus for Probe
Xbcd141-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
Map
Ta-Synthetic/Opata-3B140.6
Ta-Synthetic/Opata-BARC-3B88.3
Ta-Synthetic/Opata-GPW-3B109.5
Ta-Synthetic/Opata-update-3B254.6
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, update
Probe
BCD141
Homology
AAF54122.1e-value: 5.4(AE003675) CG10272 gene product [Drosophila melanogaster]
T48615e-value: 1e-15hypothetical protein F18O22.210 - Arabidopsis thaliana
Image
BCD141 SO autoradiogram
Possible Orthologs
bcd141
Xbcd141
Xbcd141-3A

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