Query (optional)   in Class  

GrainGenes Marker Report: BCD1555

[ Printable Version ]  [ Submit comment/correction ]

Locus
bcd1555
Type
RFLP
SNP
Synonym
SynonymPOPA3_0081
Map
Oat-KxO/2003-24_26_349.99
Physical-3B90.4
Wheat, Yr genes and QTL 3B65.9
[ Show Nearby Loci ]
Map Data
3B Physical
Oat, KxO, 2003
Wheat, Yr genes and QTL
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Remark
Marker placement value = 7.19 cM on map Oat-KxO/2003-24_26_34
Marker is not a framework marker on map Oat-KxO/2003-24_26_34
The RFLP marker was advanced to the POPA3 SNP collection.
Possible Orthologs
Xbcd1555
[ Show all 9 ]



Probe
BCD1555
Locus
bcd1555
[ Show all 16 ]
Synonym
SynonymHAR35_17539
HAR35_17540
HAR35_2907
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438991
BE439020
BCD1555_WHE05C08.s1
Polymorphism
BCD1555 DraI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1555 KO autoradiogram
BCD1555 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
bcd1555x
Type
RFLP
Map
Oat-2004-TxM_528
[ Show Nearby Loci ]
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
D1.1_ctg5319
Type
BAC_contig
Map
Ta-Gale-3D-4.9
Ta-Synthetic/Opata-BARC-3D64.2
Ta-Synthetic/Opata-DR-3D38.3
Wheat-Composite2004-3D93
[ Show Nearby Loci ]
Probe
BCD1555
PSR1060
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
D1.1_ctg8783
Type
BAC_contig
Map
Ta-Synthetic/Opata-BARC-3D64.2
Ta-Synthetic/Opata-DR-3D38.3
Wheat-Composite2004-3D93
[ Show Nearby Loci ]
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
BCD1555
Type
RFLP
Synonym
Other namebcd1555
Map
Oat-2009-KxO_24_26_340
Oat-2016-Consensus-21180.3
Oat-2018-Consensus_Mrg21180.3
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
HD050B4
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
HD050B10
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
HI050B4
Probe
AL830043
BCD1555
BJ253126
BJ254840
PSR1060
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
HI050B10
Probe
AL830043
BCD1555
BJ253126
BJ254840
PSR1060
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana



Locus for Probe
Xbcd1555
Type
RFLP
Chromosome
3B
Map
Avena-Sorrells-G22.4
Oat-KxO-346.7
Oat-KxO/AFLP-344
Oat-KxO/Q-346.7
Wheat-Composite2004-3B63
[ Show Nearby Loci ]
In QTL
BYDV, KxO-34
Map Data
Diploid Oat, Cornell2
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Wheat, Composite, 2004
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Image
BCD1555 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
Xbcd1555-3
Type
RFLP
Chromosome Arm
3L
Map
Triticeae-Sorrells-3122.2
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
Xbcd1555-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
Map
3A, CNN x WI87.1
[ Show Nearby Loci ]
In QTL
QKps.sha-3A.3
QPht.sha-3A.2
Map Data
3A, CNN x WI
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
Xbcd1555-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
Map
Ta-Synthetic/Opata-3B140.6
Ta-Synthetic/Opata-BARC-3B88.6
Ta-Synthetic/Opata-GPW-3B79.5
Ta-Synthetic/Opata-update-3B255.1
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, update
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Image
BCD1555 SO autoradiogram
Remark
Note: DraI 11.0 kb band in Opata M 85 maps on 3D.
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
Xbcd1555-3D
Type
RFLP
Chromosome
3D
Chromosome Arm
3DL
Map
Ta-Synthetic/Opata-3D115.6
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
[ Show all 7 ]
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Image
BCD1555 SO autoradiogram
Remark
Note: DraI 11.0 kb band in Altar84/Ae. squarrosa (219) CIGM86.940 maps on 3B.
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
Xbcd1555a
Type
RFLP
Chromosome
3D
Map
Wheat-Composite2004-3D93
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]



Locus for Probe
bcd1555-3B
Type
RFLP
Chromosome
3B
Probe
BCD1555
Homology
CAA12931.1e-value: 2.9(AJ228331) reverse transcriptase [Pinus strobus]
T48615e-value: 3e-40hypothetical protein F18O22.210 - Arabidopsis thaliana
Possible Orthologs
bcd1555
[ Show all 9 ]