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GrainGenes Marker Report: BCD175

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Locus
BCD175
Type
RFLP
Chromosome
2 (2H)
2H
Chromosome Arm
2HS
Map
Barley-consensus-2003-2H4.1
[ Show all 12 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QMe.HaMo-2H
QMe.nab-2H
QTil.TyVo-2H.1
Map Data
Barley consensus
[ Show all 12 ]
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
Number of populations contributing to the placement of BCD175 in the Barley, Consensus 2006 DArT maps = 1
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
BCD175.1
[ Show all 9 ]



Probe
BCD175
Locus
BCD175
[ Show all 9 ]
Synonym
SynonymHAR35_16859
HAR35_16860
HAR35_36251
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
BE438667
[ Show all 6 ]
Polymorphism
BCD175 EcoRI
Linkage Group
[b 2S]
[b 2S]
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.7
PCR size
0.7
Clone Vector
pBluSK
pBluSK-
BS-SK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD175 BROWSSM autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
pBCD175
Type
RFLP
Synonym
Other namepbcd175
Map
Oat-2009-KxO_11_41_20_458
Oat-2016-Consensus-5147.6
Oat-2018-Consensus_Mrg05147.6
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
pbcd175
Type
STS
Map
Oat-KxO/2003-11_41+203.38
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Remark
Marker placement value = 7.96 cM on map Oat-KxO/2003-11_41+20
Marker is not a framework marker on map Oat-KxO/2003-11_41+20
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
XBCD175
Type
RFLP
Chromosome
1A
Map
Hordeum-Laurie1-2H9.8
Wheat-Composite2004-1A44
[ Show Nearby Loci ]
Map Data
Barley, BxGP
Wheat, Composite, 2004
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
Xbcd175-2A
Type
RFLP
Chromosome
2A
Chromosome Arm
2AS
Map
Ta-Gale-2A-54.7
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
Xbcd175-2B
Type
RFLP
Chromosome
2B
Chromosome Arm
2BS
Map
Ta-Gale-2B-54.7
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
Xbcd175-2D
Type
RFLP
Chromosome
2D
Chromosome Arm
2DS
Map
Ta-Gale-2D-54.7
[ Show Nearby Loci ]
Map Data
Wheat, Gale
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
Xcnl.BCD175
Type
RFLP
Chromosome
2H
Map
Hordeum-Heun-2H19.4
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]



Locus for Probe
Xpbcd175
Type
STS
Map
Oat-KxO-1120.3
[ Show Nearby Loci ]
Map Data
Oat, KxO
Probe
BCD175
Homology
JW0059e-value: 9.4mtprd protein - mouse
AC007190_12e-value: 1.4(AC007190) F23N19.15 [Arabidopsis thaliana]
Possible Orthologs
BCD175
[ Show all 9 ]

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