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GrainGenes Marker Report: BCD1796

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Locus
bcd1796
Type
RFLP
Map
Oat-KxO/2003-332.37
Wheat, Yr genes and QTL 1B34.6
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Wheat, Yr genes and QTL
Probe
BCD1796
Remark
Marker placement value = 3.79 cM on map Oat-KxO/2003-33
Marker is not a framework marker on map Oat-KxO/2003-33
Possible Orthologs
BCD1796A
BCD1796B
Xbcd1796
Xbcd1796-1B
BCD1796



Probe
BCD1796
Locus
Xbcd1796-1B
HD023D11
Xbcd1796
bcd1796
BCD1796
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Polymorphism
BCD1796 EcoRI
BCD1796 HindIII
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
0.9
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD1796 KO autoradiogram
BCD1796 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
BCD1796
Type
RFLP
Synonym
Other namebcd1796
Map
Oat-2009-KxO_3311
Oat-2016-Consensus-423.8
Oat-2018-Consensus_Mrg0423.8
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD1796
Possible Orthologs
bcd1796
BCD1796A
BCD1796B
Xbcd1796
Xbcd1796-1B



Locus for Probe
HD023D11
Probe
BCD1434
BCD1796
BE443531
Homology
S40414e-value: 2.1chitinase (EC 3.2.1.14) - rice
T14812e-value: 8e-17hypothetical protein F15J5.90 - Arabidopsis thaliana



Locus for Probe
Xbcd1796
Type
RFLP
Chromosome
1A
1B
Chromosome Arm
1AS
Map
Avena-Sorrells-G71
Oat-KxO-337.1
TmTa-Dubcovsky-1A0
Wheat-Composite2004-1B43
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
Oat, KxO
Triticum, CS-G1777 DS1A^m^(1A) RSL
Wheat, Composite, 2004
Probe
BCD1796
Image
BCD1796 KO autoradiogram
Possible Orthologs
bcd1796
BCD1796A
BCD1796B
Xbcd1796-1B
BCD1796



Locus for Probe
Xbcd1796-1B
Type
RFLP
Chromosome
1B
Chromosome Arm
1BS
Map
Ta-Synthetic/Opata-1B30.5
Ta-Synthetic/Opata-BARC-1B30.1
Ta-Synthetic/Opata-GPW-1B39.1
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Probe
BCD1796
Image
BCD1796 SO autoradiogram
Remark
Ordered at LOD < 3.0 in map 'Wheat, Synthetic x Opata'.
Possible Orthologs
bcd1796
BCD1796A
BCD1796B
Xbcd1796
BCD1796