Query (optional)   in Class  

GrainGenes Marker Report: BCD1975

[Submit comment/correction]

Locus
BCD1975
Type
RFLP
Synonym
SynonymBCD197
Chromosome
7H
Map
Hordeum-Bins-7H2
Hordeum-Consensus2005-SNP-7H17.714
Hordeum-QTLConsensus-Abiotic-7H17.71
Hordeum-QTLConsensus-Agronomic-7H17.71
Hordeum-StMo-SNP-7H3.2
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, BinMap 2005
Barley, Consensus 2005, SNP
Barley, Steptoe x Morex, SNP
Probe
BCD197
BCD1975
Homology
AF370148_1e-value: 4e-08(AF370148) unknown protein [Arabidopsis thaliana]
CAB46848.1e-value: 5.3(AJ388549) hypothetical protein [Canis familiaris]
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Possible Orthologs
Xbcd1975
Xbcd1975-4A
Xbcd1975-4A.1
Xbcd1975-4A.2
Xbcd1975-7D



Probe for Locus
BCD197
Locus
Xbcd197-5D
[ Show all 9 ]
Synonym
SynonymHAR35_16239
HAR35_43304
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Lambda ZAP II library
Type
cDNA
Sequence
BE438957
BE438964
BCD197_WHE04H12.s1
Polymorphism
BCD197 XbaI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
0.8
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD197 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Probe
BCD1975
Locus
Xbcd1975-7D
[ Show all 6 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Type
cDNA
Polymorphism
BCD1975 XbaI
BCD1975 EcoRI
BCD1975 EcoRV
BCD1975 HindIII
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
PCR size
1
Clone Vector
pBluSK
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
Clone Authority
Sorrells, Mark E.
Image
BCD1975 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
Xbcd1975
Type
RFLP
Chromosome
4A
7D
Map
Wheat-Composite2004-4A152
Wheat-Composite2004-7D7
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD1975
Possible Orthologs
BCD1975
Xbcd1975-4A
Xbcd1975-4A.1
Xbcd1975-4A.2
Xbcd1975-7D



Locus for Probe
Xbcd1975-4A
Type
RFLP
Chromosome
4A
Chromosome Arm
4AL
4AS
Map
Ta-Synthetic/Opata-4A118.2
Ta-Synthetic/Opata-BARC-4A90.9
Ta-Synthetic/Opata-GPW-4A148.3
Tturgidum-JKxC-4A83.2
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Probe
BCD1975
Image
BCD1975 SO autoradiogram
Possible Orthologs
BCD1975
Xbcd1975
Xbcd1975-4A.1
Xbcd1975-4A.2
Xbcd1975-7D



Locus for Probe
Xbcd1975-4A.1
Type
RFLP
Chromosome
4A
Map
Tturgidum-JKxC2-4A63.3
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1, 2
Probe
BCD1975
Possible Orthologs
BCD1975
Xbcd1975
Xbcd1975-4A
Xbcd1975-4A.2
Xbcd1975-7D



Locus for Probe
Xbcd1975-4A.2
Type
RFLP
Chromosome
4A
Map
Tturgidum-JKxC2-4A73.5
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1, 2
Probe
BCD1975
Possible Orthologs
BCD1975
Xbcd1975
Xbcd1975-4A
Xbcd1975-4A.1
Xbcd1975-7D



Locus for Probe
Xbcd1975-7D
Type
RFLP
Chromosome
7D
Chromosome Arm
7DS
Map
Ta-Synthetic/Opata-GPW-7D0
Ta-Synthetic/Opata-SSR-7D0
Ta-Synthetic/Opata-SSR2-7D0
Ta-Synthetic/Opata-SSR_D-7D0
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR
Wheat, Synthetic x Opata, SSR 2
Wheat, Synthetic x Opata, SSR-D
Probe
BCD1975
Possible Orthologs
BCD1975
Xbcd1975
Xbcd1975-4A
Xbcd1975-4A.1
Xbcd1975-4A.2

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.