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GrainGenes Marker Report: BCD21

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Locus
bcd21
Type
RFLP
SNP
Synonym
SynonymPOPA2_0294
Chromosome
5A
5B?
5D?
5H
Map
Hordeum-Consensus2006-DArT-5H46.4
Hordeum-CxH-6H19.02
Hordeum-CxS-5H0
Physical-3B120.93
Wheat, Yr genes and QTL 6A5.1
[ Show Nearby Loci ]
Map Data
3B Physical
[ Show all 6 ]
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Remark
Number of populations contributing to the placement of BCD21 in the Barley, Consensus 2006 DArT maps = 1
The RFLP marker was advanced to the POPA2 SNP collection.
Possible Orthologs
BCD21(A)
[ Show all 13 ]



Probe
BCD21
Locus
Xbcd21-6D
[ Show all 15 ]
Synonym
SynonymHAR35_970
HAR35_971
HAR35_972
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Type
cDNA
Sequence
BE438769
BCD21_WHE1F0052
BCD21_WHE1F0051
Polymorphism
Durums BCD21 EcoRI
Linkage Group
5L, 6S
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1
PCR size
1
Clone Vector
pBluSK
pBluSK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
BCD21(A)
Type
RFLP
Map
Hordeum-GxH-6H85.28
[ Show Nearby Loci ]
Map Data
Barley, GxH
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
BCD21(B)
Type
RFLP
Map
Hordeum-GxH-5H108.48
[ Show Nearby Loci ]
Map Data
Barley, GxH
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
BCD21a
Type
RFLP
Chromosome
5H
Map
Barley-consensus-2003-5H22.7
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Data Source
Langridge, Peter J.
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
BCD21B
Type
RFLP
Chromosome
6A
6B
6D
6H
Chromosome Arm
6AS
6BS
6DS
Map
Barley-consensus-2003-6H15.3
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
Wheat chromosome arm map
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Data Source
Langridge, Peter J.
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
HD027K7
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]



Locus for Probe
Xbcd21
Type
RFLP
Chromosome
1B
3B
5A
Map
Wheat-Composite2004-1B85
Wheat-Composite2004-3B65
Wheat-Composite2004-5A21
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-1B
Type
RFLP
Map
Ta-Synthetic/Opata-GPW-1B94.3
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, GPW
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-3A
Type
RFLP
Map
Ta-Courtot/CS-GPW-3A196.9
[ Show Nearby Loci ]
Map Data
Wheat, Courtot x Chinese Spring, GPW
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
5AL, q deletions51
[ Show Nearby Loci ]
Breakpoint Interval
5AL-q31/5AL-q23
Map Data
5AL, CS q deletions, physical
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-6A
Type
RFLP
Chromosome
6A
Chromosome Arm
6AS
Map
Ta-Synthetic/Opata-6A-82
Ta-Synthetic/Opata-BARC-6A5.4
Ta-Synthetic/Opata-GPW-6A4.2
Tturgidum-JKxC-6A152
Tturgidum-JKxC2-6A387
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1
T. turgidum, JK x Cham1, 2
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
2 Point Data
Rf-U/Xbcd21
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-6B
Type
RFLP
Chromosome
6B
Chromosome Arm
6BS
2 Point Data
Rf-U2/Xbcd21
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21-6D
Type
RFLP
Chromosome
6D
Chromosome Arm
6DS
Species
Triticum aestivum
Probe
BCD21
ReferenceAnderson JA et al. (1992) Development of a chromosomal arm map for wheat based on RFLP markers. Theoretical and Applied Genetics 83:1035-1043.
BCD21
ReferenceMa Z-Q et al. (1993) RFLP markers linked to two Hessian fly-resistance genes in wheat (Triticum aestivum L.) from Triticum tauschii (coss.) Schmal. Theoretical and Applied Genetics 85:750-754.
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Reference
ReferenceMa Z-Q et al. (1993) RFLP markers linked to two Hessian fly-resistance genes in wheat (Triticum aestivum L.) from Triticum tauschii (coss.) Schmal. Theoretical and Applied Genetics 85:750-754.
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
Xbcd21a
Type
RFLP
Chromosome
6A
Map
Wheat-Composite2004-6A21
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]



Locus for Probe
bcd21-6A
Type
RFLP
Chromosome
6A
Probe
BCD21
Homology
AAD12207.1e-value: 2e-58(AC006135) putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Possible Orthologs
bcd21
[ Show all 13 ]