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GrainGenes Marker Report: BCD266

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Locus
BCD266
Type
RFLP
SNP
Synonym
SynonymPOPA3_0396
Chromosome
2 (2H)
2H
Chromosome Arm
2HL
Map
Barley-consensus-2003-2H130
[ Show all 8 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QMe.BlKy-2H.2
QSgw.BlKy-2H.2
QTw.BlKy-2H.2
Map Data
Barley consensus
[ Show all 8 ]
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
Number of populations contributing to the placement of BCD266 in the Barley, Consensus 2006 DArT maps = 1
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
The RFLP marker was advanced to the POPA3 SNP collection.
Possible Orthologs
BCD266a
[ Show all 8 ]



Probe
BCD266
Locus
Xbcd266-2
[ Show all 9 ]
Synonym
SynonymHAR35_15015
HAR35_15016
HAR35_33212
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
BE438697
BE438789
BCD266_WHE1B0101
BCD266_WHE1B0102
Polymorphism
BCD266 EcoRI
Linkage Group
[b 2L]
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5
Clone Vector
pBluSK
pBluSK-
BS-SK-
lambda_Zap
pBS
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
m13reverse 5'AACAGCTATGACCATG
m13forward 5'GTAAAACGACGGCCACT
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD266 BROWS autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09
Gill, Bikram S.92.09



Locus for Probe
BCD266a
Type
RFLP
Chromosome Arm
1AS
Map
Ta-Anderson-1A35
Tt-Gill-2D357.2
[ Show Nearby Loci ]
Map Data
T.tauschii
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
BCD266b
Type
RFLP
Map
Tt-Gill-2D372.5
[ Show Nearby Loci ]
Map Data
T.tauschii
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
BCD266D
Type
RFLP
Chromosome Arm
1AS
Map
Ta-Anderson-1A35
[ Show Nearby Loci ]
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
Xbcd266
Type
RFLP
Map
Rye-2009-Consensus-2R36.4
[ Show Nearby Loci ]
Map Data
Rye_2009_consensus
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
XBCD266
Type
RFLP
Chromosome
2R
Chromosome Arm
2HL
2RL
Map
Avena-Sorrells-B17.4
[ Show all 8 ]
[ Show Nearby Loci ]
Map Data
Barley, BxGP
[ Show all 8 ]
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
Xbcd266-2
Type
RFLP
Chromosome Arm
2L
Map
Triticeae-Sorrells-2154.8
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
Xbcd266-2R
Type
RFLP
Chromosome
2R
Map
Secale-N6xN2-2004-2R106.8
Secale-N7xN2-2004-2R154.7
Secale-N7xN6-2004-2R94
Secale-PxP-2004-2R113.8
[ Show Nearby Loci ]
Map Data
Rye, N6 x N2, 2004
Rye, N7 x N2, 2004
Rye, N7 x N6, 2004
Rye, P87 x P105, 2004
Species
Secale cereale
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Reference
ReferenceKhlestkina EK et al. (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags Theoretical and Applied Genetics 109:725-732.
Possible Orthologs
BCD266
[ Show all 8 ]



Locus for Probe
Xcnl.BCD266
Type
RFLP
Chromosome
2H
Map
Hordeum-Heun-2H289.7
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
BCD266
Homology
AAD11455.2e-value: 1.3(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
AAD11455.2e-value: 2.1(U82549) sodium/potassium-transporting ATPase alpha-1 subunit [Oreochromis mossambicus]
Possible Orthologs
BCD266
[ Show all 8 ]