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GrainGenes Marker Report: BCD738

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Locus
BCD738
Type
RFLP
Chromosome
1A
1B
1D
1H
Chromosome Arm
1AL
1BL
1DL
Map
Hordeum-FxS-FHB-QTL-1H73.9
Rice-CU-5104.3
[ Show Nearby Loci ]
Map Data
Barley, FxS, FHB QTL
Rice, BxOl
Wheat chromosome arm map
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Reference
ReferenceMesfin A et al. (2003) Quantitative trait loci for fusarium head blight resistance in barley detected in a two-rowed by six-rowed population Crop Science 43:307-318.
Possible Orthologs
BCD738a
BCD738b
Xbcd738
Xbcd738-1
Xbcd738-1A



Probe
BCD738
Locus
Xbcd738-1
[ Show all 6 ]
Synonym
SynonymHAR35_19
HAR35_344
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
Sequence
BE438627
[ Show all 6 ]
Polymorphism
BCD738 EcoRI
Linkage Group
1L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.8
PCR size
0.8
Clone Vector
pBluSK
pBluSK-
BS-SK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
BCD738 BROWS autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
BCD738a
Type
RFLP
Map
Zea-Ahn-6128.25
[ Show Nearby Loci ]
Map Data
Maize, TxCM
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Possible Orthologs
BCD738
BCD738b
Xbcd738
Xbcd738-1
Xbcd738-1A



Locus for Probe
BCD738b
Type
RFLP
Map
Zea-Ahn-887.7
[ Show Nearby Loci ]
Map Data
Maize, TxCM
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Possible Orthologs
BCD738
BCD738a
Xbcd738
Xbcd738-1
Xbcd738-1A



Locus for Probe
Xbcd738
Type
RFLP
Chromosome
1A
1D
1R
Chromosome Arm
1AL
1DL
1RL
Map
Rye-2009-Consensus-1R61.2
Secale-UxE-149.6
Ta-Physical-Gill-1ABD47
TmTa-Dubcovsky-1A28.7
Wheat-Composite2004-1A70
[ Show Nearby Loci ]
Breakpoint Interval
1L-0.45-0.59
Map Data
Rye, UC90 x E-line
Rye_2009_consensus
Triticum, CS-G1777 DS1A^m^(1A) RSL
Wheat, Composite, 2004
Wheat, Physical
Species
Triticum aestivum
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
BCD738
BCD738a
BCD738b
Xbcd738-1
Xbcd738-1A



Locus for Probe
Xbcd738-1
Type
RFLP
Chromosome Arm
1L
Map
Triticeae-Sorrells-180
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Possible Orthologs
BCD738
BCD738a
BCD738b
Xbcd738
Xbcd738-1A



Locus for Probe
Xbcd738-1A
Type
RFLP
Map
Ta-Courtot/CS-GPW-1A85.7
[ Show Nearby Loci ]
Map Data
Wheat, Courtot x Chinese Spring, GPW
Probe
BCD738
Homology
PGKH_WHEATe-value: 1e-59PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 5e-28PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
PGKH_WHEATe-value: 1e-17PHOSPHOGLYCERATE KINASE, CHLOROPLAST PRECURSOR
Possible Orthologs
BCD738
BCD738a
BCD738b
Xbcd738
Xbcd738-1