Query (optional)   in Class  

GrainGenes Marker Report: BCD828

[Submit comment/correction]

Locus
BCD828
Type
RFLP
Synonym
SynonymRrs.B87 (Hordeum)
Chromosome
3A
3B
3D
3H
Chromosome Arm
3AL
3BL
3DL
3HS
Map
Barley-Consensus-3H-0.1
[ Show all 17 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 18 ]
Probe
BCD828
Associated Gene
Rrs.B87 (Hordeum)
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceWilliams K et al. (2001) Mapping of a gene for leaf scald resistance in barley line 'B87/14' and validation of microsatellite and RFLP markers for marker-assisted selection Plant Breeding 120:301-304.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of BCD828 in the Barley, Consensus 2006 DArT maps = 1
The BCD828 RFLP/STS is a gene marker for the Rrs.B87 (Hordeum) gene
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
BCD828-3H
[ Show all 9 ]



Gene Associated with Locus
Rrs.B87 (Hordeum)
Locus
BCD828



Probe
BCD828
Locus
Xbcd828-3
[ Show all 11 ]
Synonym
Other nameBCD1127
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Bar.LambZAPII
Type
cDNA
STS
PCR primers
AACAGCTATGACCATG
GTAAAACGACGGCCACT
Sequence
BE438720
BE438812
BCD828_WHE1D0101
BCD828_WHE1D0102
BCD828-5
Polymorphism
BCD828 EcoRI
BCD828 XbaI
Linkage Group
3L
3
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
0.7
PCR size
0.7
Clone Vector
pBluSK
pBluSK-
BS-SK-
pBS
lambda_Zap
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
m13reverse 5'AACAGCTATGACCATG
m13forward 5'GTAAAACGACGGCCACT
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Blake, Tom
Image
BCD828 BROWS autoradiogram
BCD828 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
[ Show all 6 ]



Locus for Probe
BCD828-3H
Type
RFLP
Map
Hv-IxF-Stein-3H16.35
Hv-SxM-Stein-3H52.45
[ Show Nearby Loci ]
Map Data
Barley, IxF, Stein2006
Barley, SxM, Stein2006
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
bcd828a
Type
RFLP
Map
Oat-2002-OxT-QTL_1176
Oat-OxT-1180.6
[ Show Nearby Loci ]
In QTL
QEFLD.2002-OxT_11
QNSGC.2002-OxT_11
Map Data
Oat, OxT
Oat-2002-OxT-QTL
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
bcd828b
Type
RFLP
Map
Oat-OxT-670
[ Show Nearby Loci ]
Map Data
Oat, OxT
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
BCD828A
Type
RFLP
Synonym
Other namebcd828a
Map
Oat-2016-Consensus-1532.7
Oat-2018-Consensus_Mrg1532.7
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
BCD828B
Type
RFLP
Synonym
Other namebcd828b
Map
Oat-2016-Consensus-2362.1
Oat-2016-OxT_184
Oat-2018-Consensus_Mrg2362.1
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2016-OxT
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
bcd828
Type
RFLP
Map
Oat-2013-SxW-RGA_AswI2
Wheat, Yr genes and QTL 3A39.7
Wheat_Yr_2021-3A85.76
[ Show Nearby Loci ]
Map Data
Oat-2013-SxW-RGA
Wheat, Yr genes and QTL
Wheat, Yr Update, 2021
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
RI020G9
Probe
BCD828
BE404401
BE490596
PSR155
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]



Locus for Probe
Xbcd828
Type
RFLP
Chromosome
3A
3R
Chromosome Arm
3HS
3RS
Map
Avena-Sorrells-C43.3
Hbulbosum-PB1xPB11-329
Rye-2009-Consensus-3R57.1
Secale-UxE-357.2
Wheat-Composite2004-3A80
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
H. bulbosum, PB1 x PB11
Rye, UC90 x E-line
Rye_2009_consensus
Wheat, Composite, 2004
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
Xbcd828-3
Type
RFLP
Chromosome Arm
3L
Map
Triticeae-Sorrells-365.8
Triticeae-Sorrells-3-update51.1
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Possible Orthologs
BCD828
[ Show all 9 ]



Locus for Probe
Xbcd828-3A
Type
RFLP
Synonym
Other nameXbcd1127-3A
Chromosome
3A
Chromosome Arm
3AL
3AS
Map
3A-SxY110
Ta-Synthetic/Opata-3A65.6
Ta-Synthetic/Opata-BARC-3A63
Ta-Synthetic/Opata-update-3A135
Tdicoccoides-FHB-QTL-3AS43.1
[ Show Nearby Loci ]
In QTL
QFhs.ndsu-3AS
Map Data
3A, SxY, QTL
T.dicoccoides, FHB QTL
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, update
Species
Triticum aestivum
Probe
BCD828
Homology
COQ2_SCHPOe-value: 5.1PUTATIVE PARA-HYDROXYBENZOATE--POLYPRENYLTRANSFERASE, MITOCHONDRIAL PRECURSOR (PHB:POLYPRENYLTRANSFERASE) mitochondrial - fission yeast (Schizosaccharomyces pombe) precursor(ec 2.5.1.-) [Schizosaccharomyces pombe] [Schizosaccharomyces pombe]
AAD00764.1e-value: 1.8(U94992) transcription factor XHEN1 [Xenopus laevis]
Image
BCD828 SO autoradiogram
Reference
ReferenceOtto CD et al. (2002) Genetic dissection of a major Fusarium head blight QTL in tetraploid wheat Plant Molecular Biology 48:625-632.
ReferenceParker GD et al. (1999) Mapping loci associated with milling yield in wheat (Triticum aestivum L.) Molecular Breeding 5:561-568.
Possible Orthologs
BCD828
[ Show all 9 ]

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.