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GrainGenes Marker Report: BCD926

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Locus
bcd926
Type
RFLP
Synonym
Synonymbcd926
Chromosome
5A
5B
5D
5H
Map
Hordeum-Bins-5H94.7
[ Show all 11 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 12 ]
Probe
BCD926
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Close, Timothy J.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Possible Orthologs
Xbcd926
[ Show all 6 ]



Probe
BCD926
Locus
Xbcd926-5A
[ Show all 7 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Lambda ZAP II library
Bar.LambZAPII [c]
Type
cDNA
Polymorphism
BCD926 EcoRI
Durums BCD926 EcoRI
BCD926 HindIII
Linkage Group
5L
Insert Enzyme
EcoRI
Source Species
Hordeum vulgare
Source Germplasm
Willis
Source Tissue
etiolated leaf
Insert Size
1.4
PCR size
1.4
Clone Vector
pBluSK
pBluSK-
Excision Enzyme
EcoRI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 78 sec, 50 C 78 sec, 72 C 120 sec, 25 times; 94 C for 78 sec, 50 C 78 sec, 72 C 5 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
Clone Authority
Sorrells, Mark E.
Image
BCD926 BROWS autoradiogram
BCD926 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
BCD926
Type
RFLP
Synonym
Other namebcd926
Map
Oat-2016-Consensus-667.6
Oat-2018-Consensus_Mrg0667.6
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
BCD926
Possible Orthologs
bcd926
[ Show all 6 ]



Locus for Probe
Xbcd926
Type
RFLP
Chromosome
5A
Chromosome Arm
5HL
Map
Avena-Sorrells-E98.6
Hbulbosum-PB1xPB11-542
Wheat-Composite2004-5A44
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
H. bulbosum, PB1 x PB11
Wheat, Composite, 2004
Probe
BCD926
Possible Orthologs
bcd926
[ Show all 6 ]



Locus for Probe
Xbcd926-5A
Type
RFLP
Chromosome
5A
Chromosome Arm
5AL
Map
Ta-Physical-Sarma-5A0.28
[ Show all 7 ]
[ Show Nearby Loci ]
Breakpoint Interval
C-5AL10-0.56
Map Data
T. turgidum, JK x Cham1
[ Show all 7 ]
Probe
BCD926
Image
BCD926 SO autoradiogram
Possible Orthologs
bcd926
[ Show all 6 ]



Locus for Probe
Xbcd926-5B
Type
RFLP
Chromosome
5B
Chromosome Arm
5BL
Map
Ta-Physical-Sarma-5B0.36
[ Show Nearby Loci ]
Breakpoint Interval
5BL6-0.29-0.43
Map Data
Wheat, Physical, Group 5
Probe
BCD926
Possible Orthologs
bcd926
[ Show all 6 ]



Locus for Probe
Xbcd926-5D
Type
RFLP
Chromosome
5D
Chromosome Arm
5DL
Map
Ta-Physical-Sarma-5D0.3
[ Show Nearby Loci ]
Breakpoint Interval
C-5DL1-0.60
Map Data
Wheat, Physical, Group 5
Probe
BCD926
Possible Orthologs
bcd926
[ Show all 6 ]



Locus for Probe
bcd926-5A
Type
RFLP
Chromosome
5A
Map
Wheat_Yr_2021-5A79.99
[ Show Nearby Loci ]
Map Data
Wheat, Yr Update, 2021
Probe
BCD926
Possible Orthologs
bcd926
[ Show all 6 ]

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