Query (optional)   in Class  

GrainGenes Marker Report: Bmac0560a

[ Printable Version ]  [ Submit comment/correction ]

Locus
Bmac0560a
Type
Microsatellite
Chromosome
1H
Map
Hordeum-Consensus2005-SNP-1H68.222
Hordeum-LiHs-SNP-1H60.84
Hordeum-QTLConsensus-Abiotic-1H68.22
Hordeum-QTLConsensus-Agronomic-1H68.22
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, Consensus 2005, SNP
Barley, Lina x H.spont, SNP
Probe
EBmac560
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Possible Orthologs
Bmac0560b
[ Show all 7 ]



Probe for Locus
EBmac560
Locus
EBmac0560a
[ Show all 7 ]
Synonym
Other nameEBmac0560
Reference
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
General Remarks
Insert contains repeat (AC)7
Quality = 4: Ladders of bands that are at equal intensity, but may contain scoreable weak products
Type
PCR
SSR
PCR primers
5' CATATGTGTGCAAGTGTGC 3'
5' AGATCCATGAGGTTGTGC 3'
SSR size
171
Amplification Conditions
1 cycle of 3 min @ 94C, 1 min @ 58C, 1 min @ 72C, 30 cycles of 30 secs @ 94C, 30 secs @ 58C, 30 secs @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare