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GrainGenes Marker Report: CDO1196

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Locus
cdo1196
Type
RFLP
Synonym
SynonymPOPA3_1026
Map
Oat-2004-TxM_1513
Oat-KxO/2003-22_44+18163
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2004-TxM
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-22_44+18
Marker is a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
cdo1196y
cdo1196z
Xcdo1196
Xcdo1196-1B
CDO1196



Probe
CDO1196
Locus
Xcdo1196
[ Show all 10 ]
Synonym
SynonymHAR35_14205
HAR35_14207
HAR35_42740
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439362
BE439331
CDO1196_WHE05E10.s1
Polymorphism
CDO1196 DraI
CDO1196 EcoRI
CDO1196 EcoRV
CDO1196 HindIII
CDO1196 XbaI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1196 KO autoradiogram
CDO1196 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
cdo1196y
Type
RFLP
Map
Oat-MxN_2005-1437.5
[ Show Nearby Loci ]
Map Data
Oat, MxN, genetic 2005
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo1196
cdo1196z
Xcdo1196
Xcdo1196-1B
CDO1196



Locus for Probe
cdo1196z
Type
RFLP
Map Data
Oat, MxN, genetic 2005
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo1196
cdo1196y
Xcdo1196
Xcdo1196-1B
CDO1196



Locus for Probe
CDO1196
Type
RFLP
Synonym
Other namecdo1196
Map
Oat-2009-KxO_22_44_18158
Oat-2016-Consensus-2024.8
Oat-2016-KxO_128.1
Oat-2018-Consensus_Mrg2024.8
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo1196
cdo1196y
cdo1196z
Xcdo1196
Xcdo1196-1B



Locus for Probe
HD053E17
Probe
BE438268
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]



Locus for Probe
HD053F18
Probe
BE438268
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]



Locus for Probe
HI057G5
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]



Locus for Probe
HI061L21
Probe
BE438268
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]



Locus for Probe
Xcdo1196
Type
RFLP
Chromosome
1B
Map
Oat-KxO-2214.1
Oat-KxO/AFLP-228
Oat-KxO/Q-2214.1
Wheat-Composite2004-1B77
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Wheat, Composite, 2004
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Image
CDO1196 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo1196
cdo1196y
cdo1196z
Xcdo1196-1B
CDO1196



Locus for Probe
Xcdo1196-1B
Type
RFLP
Chromosome
1B
Chromosome Arm
1BL
Map
Ta-Synthetic/Opata-GPW-1B85.3
Ta-Synthetic/Opata-SSR2-1B84.5
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, SSR 2
Probe
CDO1196
Homology
BAB09477.1e-value: 2e-37(AB012246) casein kinase-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo1196
cdo1196y
cdo1196z
Xcdo1196
CDO1196