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GrainGenes Marker Report: CDO1312B

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Locus
CDO1312B
Type
RFLP
Synonym
Other namecdo1312b
Chromosome
4B
4D
Chromosome Arm
4BL
4DL
Map
Oat-2009-KxO_5_3067
Oat-2016-Consensus-117.4
Oat-2016-KxO_215
Oat-2018-Consensus_Mrg0117.4
Oat-KxO/2003-569.8
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Avena sativa L.
Probe
CDO1312
Homology
AF295664_1e-value: 9e-05(AF295664) CBL-interacting protein kinase 9 [Arabidopsis thaliana]
AF339147_1e-value: 4e-33(AF339147) SOS2-like protein kinase PKS5 [Arabidopsis thaliana]
Remark
Marker placement value = 12.40 cM on map Oat-KxO/2003-5
Marker is not a framework marker on map Oat-KxO/2003-5
Possible Orthologs
CDO1312
[ Show all 29 ]



Probe for Locus
CDO1312
Locus
Xcdo1312-4B
[ Show all 33 ]
Synonym
SynonymHAR35_1447
HAR35_1448
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439333
BE439364
CDO1312_WHE05E12.s1
Polymorphism
CDO1312 XbaI
Linkage Group
1BL4BL4DL5AL
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.4
PCR size
1.4
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1312 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09

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