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GrainGenes Marker Report: CDO1328

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Locus
CDO1328
Type
RFLP
Synonym
Other namecdo1328
Chromosome
2A
2B
2D
Chromosome Arm
2AL
2DL?
Map
Hordeum-Bins-2H71
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley, BinMap 2005
[ Show all 7 ]
Species
Avena sativa
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Marker placement value = 2.70 cM on map Oat-KxO/2003-7_10_28
Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
CDO1328b
Xcdo1328
Xcdo1328b
cdo1328



Probe
CDO1328
Locus
CDO1328b
Xcdo1328
CDO1328
Xcdo1328b
cdo1328
Synonym
SynonymHAR35_4885
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439066
[ Show all 7 ]
Polymorphism
CDO1328 EcoRI
Linkage Group
2L
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.1
PCR size
1.1
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1328 BROWS autoradiogram
CDO1328 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
cdo1328
Type
RFLP
Map
Oat-2006-LAG211_37
[ Show Nearby Loci ]
Map Data
Oat-2006-LAG211
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO1328
CDO1328b
Xcdo1328
Xcdo1328b



Locus for Probe
CDO1328b
Type
RFLP
Map
Zea-Ahn-288.1
[ Show Nearby Loci ]
Map Data
Maize, TxCM
Wheat chromosome arm map
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO1328
Xcdo1328
Xcdo1328b
cdo1328



Locus for Probe
Xcdo1328
Type
RFLP
Chromosome
4R
Chromosome Arm
4RL
Map
Avena-Sorrells-B53
[ Show all 6 ]
[ Show Nearby Loci ]
In QTL
BYDV, KxO-10
Map Data
Diploid Oat, Cornell2
[ Show all 6 ]
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
CDO1328
CDO1328b
Xcdo1328b
cdo1328



Locus for Probe
Xcdo1328b
Type
RFLP
Chromosome
2R
Chromosome Arm
2RS
Map
Rye-2009-Consensus-2R12.6
Secale-UxE-214.1
[ Show Nearby Loci ]
Map Data
Rye, UC90 x E-line
Rye_2009_consensus
Probe
CDO1328
Homology
BAB02685.1e-value: 3e-27(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
BAB02685.1e-value: 8e-41(AB018114) gb|AAD14522.1~gene_id:MGF10.2~similar to unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO1328
CDO1328b
Xcdo1328
cdo1328