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GrainGenes Marker Report: CDO1380

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Locus
cdo1380
Type
RFLP
Synonym
SynonymCDO1380a
CDO1380b
Chromosome
6A
6B
6D
Chromosome Arm
6AL
6BL
6DL
Map
Oat-2003-OglexMAM17-5_339
Oat-2004-OxM-QTL4_345.6
Oat-KxO/2003-360
RGA-2013_KO360
Rice-CU-281.1
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 7 ]
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-36
Marker is a framework marker on map Oat-KxO/2003-36
Possible Orthologs
CDO1380a
[ Show all 8 ]



Probe
CDO1380
Locus
CDO1380a
[ Show all 20 ]
Synonym
Other nameCD1380
SynonymHAR35_17894
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439201
CDO1380_WHE03D03.r1
AA231833
AA231886
Polymorphism
CDO1380 EcoRI
CDO1380 DraI
Linkage Group
6L
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.2
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1380 BROWS autoradiogram
CDO1380 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
Sorrells, Mark E.94.10.31
ATMI92.09



Locus for Probe
CD1380A
Type
RFLP
Map
Saccharum-CU/CIBR-4815.8
[ Show Nearby Loci ]
Map Data
Saccharum, CU/CIBR
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Data Source
da Silva, Jorge Alberto Goncalves93.10
Possible Orthologs
CD1380B
CD1380C
CD1380D



Locus for Probe
CD1380B
Type
RFLP
Map
Saccharum-CU/CIBR-264.2
[ Show Nearby Loci ]
Map Data
Saccharum, CU/CIBR
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Data Source
da Silva, Jorge Alberto Goncalves93.10
Possible Orthologs
CD1380A
CD1380C
CD1380D



Locus for Probe
CD1380C
Type
RFLP
Map
Saccharum-CU/CIBR-2364
[ Show Nearby Loci ]
Map Data
Saccharum, CU/CIBR
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Data Source
da Silva, Jorge Alberto Goncalves93.10
Possible Orthologs
CD1380A
CD1380B
CD1380D



Locus for Probe
CD1380D
Type
RFLP
Map
Saccharum-CU/CIBR-5836
[ Show Nearby Loci ]
Map Data
Saccharum, CU/CIBR
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Data Source
da Silva, Jorge Alberto Goncalves93.10
Possible Orthologs
CD1380A
CD1380B
CD1380C



Locus for Probe
CDO1380a
Type
RFLP
Synonym
Synonymcdo1380
Chromosome
5H
Map
Hordeum-Bins-5H176.9
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 6 ]
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
CDO1380b
Type
RFLP
Synonym
Synonymcdo1380
Chromosome
7H
Map
Hordeum-Bins-7H103.7
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 6 ]
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
CDO1380c
Type
RFLP
Map
Saccharum-237.2
[ Show Nearby Loci ]
Map Data
Saccharum, Cornell
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
CDO1380B
Type
RFLP
Map
Oat-2016-Consensus-1723.1
Oat-2016-OxT_2621.9
Oat-2018-Consensus_Mrg1723.1
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2016-OxT
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
CDO1380A
Type
RFLP
Map
Oat-2016-Consensus-1723.1
Oat-2016-OxT_2621.9
Oat-2018-Consensus_Mrg1723.1
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2016-OxT
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
CDO1380
Type
RFLP
Synonym
Other namecdo1380
Map
Oat-2002-KxO-Pal_360
Oat-2009-KxO_363
Oat-2014-KxO_360
Oat-2016-Consensus-1742.7
Oat-2018-Consensus_Mrg1742.7
[ Show Nearby Loci ]
Map Data
Oat-2002-KxO_Pal
Oat-2009-KxO
Oat-2014-AB_QTL
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
HD012H3
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P2
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P3
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P4
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P6
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P7
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
HD012P8
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]



Locus for Probe
Xcdo1380
Type
RFLP
Map
Avena-Sorrells-G83.6
[ Show all 9 ]
[ Show Nearby Loci ]
In QTL
Yield, KxO-36-a
Map Data
Diploid Oat, AFLP
[ Show all 9 ]
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Image
CDO1380 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo1380
[ Show all 8 ]



Locus for Probe
Xcdo1380-6B
Type
RFLP
Map
Tturgidum-Du-6B-8.3
[ Show Nearby Loci ]
Map Data
T. turgidum, durum x dicoccoides
Probe
CDO1380
Homology
CAC05452.1e-value: 1e-17(AL391712) putative protein [Arabidopsis thaliana]
Possible Orthologs
cdo1380
[ Show all 8 ]

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