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GrainGenes Marker Report: CDO1385

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Probe
CDO1385
Locus
Xcdo1385A
[ Show all 18 ]
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439299
CDO1385_WHE05F02.s1
CN180770
Polymorphism
CDO1385 DraI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.4
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO1385 KO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
Xcdo1385H
Type
RFLP
Map
Oat-2000-KxM-Bgl_5X0
[ Show Nearby Loci ]
In QTL
Qbgl.KxM-Bgl_5X
Map Data
Oat-2000-KxM-Bgl
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
Xcdo1385F
Type
RFLP
Map
Oat-1996-OT328xDumont_40
Oat-2001-KxO_4-1211.25
[ Show Nearby Loci ]
Map Data
Oat-1996-OT328xDumont
Oat-2001-KxO
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385E
Type
RFLP
Map
Oat-2001-KxO-QTL_7-10-2882.5
Oat-2001-KxO_7-10-2882.5
Oat-2009-KxO_7_10_2871
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2001-KxO-QTL
Oat-2009-KxO
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
cdo1385a
Type
RFLP
Map
Oat-2003-OglexMAM17-5_228
Oat-KxO/2003-1552.2
RGA-2013_KO1552
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2003-OglexMAM17-5
Oat-2013-KxO-RGA
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-15
Marker is a framework marker on map Oat-KxO/2003-15
Possible Orthologs
cdo1385b
[ Show all 17 ]



Locus for Probe
cdo1385b
Type
RFLP
Map
Oat-2003-OglexMAM17-5_2319
Oat-KxO/2003-685.6
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2003-OglexMAM17-5
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 8.78 cM on map Oat-KxO/2003-6
Marker is not a framework marker on map Oat-KxO/2003-6
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
cdo1385c
Type
RFLP
Map
Oat-2003-OglexMAM17-5_2319
Oat-2004-KxO-RGA_KO7_10_2873.41
Oat-2004-OT328xDumont_47
Oat-2006-KxO-RGA_KO7_10_2817.5
Oat-KxO/2003-7_10_2878.9
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2003-OglexMAM17-5
Oat-2004-KxO-RGA
Oat-2004-OT328xDumont
Oat-2006-KxO-RGA
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 3.44 cM on map Oat-KxO/2003-7_10_28
Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
cdo1385d
Type
RFLP
Map
Oat-KxO/2003-3+3873.7
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 3.23 cM on map Oat-KxO/2003-3+38
Marker is not a framework marker on map Oat-KxO/2003-3+38
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
cdo1385e
Type
RFLP
Map
Oat-KxO/2003-7_10_2873.7
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 18.80 cM on map Oat-KxO/2003-7_10_28
Marker is not a framework marker on map Oat-KxO/2003-7_10_28
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
cdo1385f
Type
RFLP
Map
Oat-2004-OT328xDumont_10
Oat-2004-TxM_33
Oat-2010-MAMA-OTDu_13
Oat-KxO/2003-4_1212.4
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2004-OT328xDumont
Oat-2004-TxM
Oat-2010-MAMA
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Remark
Marker placement value = 2.47 cM on map Oat-KxO/2003-4_12
Marker is not a framework marker on map Oat-KxO/2003-4_12
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385B
Type
RFLP
Synonym
Other namecdo1385b
Map
Oat-2001-KxO_612.5
Oat-2009-KxO_695
Oat-2016-Consensus-129.2
Oat-2016-KxO_5130
Oat-2018-Consensus_Mrg129.2
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385A
Type
RFLP
Synonym
Other namecdo1385a
Map
Oat-2001-KxO_1542.5
Oat-2009-KxO_1556
Oat-2016-Consensus-1535.1
Oat-2016-KxO_890.6
Oat-2018-Consensus_Mrg1535.1
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385D
Type
RFLP
Synonym
Other namecdo1385d
Map
Oat-2001-KxO_3-38147.5
Oat-2009-KxO_1_3_38_break0
Oat-2016-Consensus-1844.8
Oat-2018-Consensus_Mrg1844.8
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385F
Type
RFLP
Synonym
Other namecdo1385f
Map
Oat-2001-KxO_4-1211.25
Oat-2009-KxO_4_12_13127
Oat-2016-Consensus-1978.5
Oat-2018-Consensus_Mrg1978.5
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
CDO1385C
Type
RFLP
Synonym
Other namecdo1385c
Map
Oat-2001-KxO_7-10-2860
Oat-2009-KxO_7_10_2871
Oat-2016-Consensus-3392.8
Oat-2018-Consensus_Mrg3392.8
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
Xcdo1385A
Type
RFLP
Map
Oat-2001-KxO_1542.5
Oat-2003-OglexMAM17-5_228
Oat-KxO-1557
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-2001-KxO
Oat-2003-OglexMAM17-5
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Image
CDO1385 KO autoradiogram
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
Xcdo1385B
Type
RFLP
Map
Oat-1996-ROxpg9_60
Oat-2001-KxO_612.5
Oat-2003-OglexMAM17-5_2319
Oat-KxO-611.2
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-1996-ROxpg9
Oat-2001-KxO
Oat-2003-OglexMAM17-5
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Image
CDO1385 KO autoradiogram
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
Xcdo1385C
Type
RFLP
Map
Oat-2001-KxO_7-10-2860
Oat-2003-OglexMAM17-5_2319
Oat-2004-KxO-RGA_KO7_10_2873.41
Oat-2006-KxO-RGA_KO7_10_2817.5
Oat-KxO-719.2
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-2001-KxO
Oat-2003-OglexMAM17-5
Oat-2004-KxO-RGA
Oat-2006-KxO-RGA
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Image
CDO1385 KO autoradiogram
Possible Orthologs
cdo1385a
[ Show all 17 ]



Locus for Probe
Xcdo1385D
Type
RFLP
Map
Oat-KxO-343.6
[ Show Nearby Loci ]
Map Data
Oat, KxO
Probe
CDO1385
Homology
AF216313_1e-value: 8e-04(AF216313) cytochrome P450 [Helianthus annuus]
Image
CDO1385 KO autoradiogram
Possible Orthologs
cdo1385a
[ Show all 17 ]

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