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GrainGenes Marker Report: CDO220

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Locus
cdo220
Type
RFLP
Map
Oat-1997-64Lines_40
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Probe
CDO220
Homology
CAC01690.1e-value: 3.5(AJ297523) Cig protein [Mucor circinelloides]
Remark
Marker placement value = 7.46 cM on map Oat-KxO/2003-4_12
Marker is not a framework marker on map Oat-KxO/2003-4_12
Possible Orthologs
Xcdo220
CDO220



Probe
CDO220
Locus
Xcdo220
cdo220
CDO220
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439119
CDO220_WHE2D0061
CDO220_WHE2D0062
Polymorphism
CDO220 EcoRI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO220 KO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
CDO220
Type
RFLP
Synonym
Other namecdo220
Map
Oat-1997-64Lines_40
Oat-2001-KxO_4-1245
Oat-2009-KxO_4_12_13156
Oat-2016-Consensus-1952.4
Oat-2018-Consensus_Mrg1952.4
[ Show Nearby Loci ]
Map Data
Oat-1997-64Lines
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO220
Homology
CAC01690.1e-value: 3.5(AJ297523) Cig protein [Mucor circinelloides]
Possible Orthologs
cdo220
Xcdo220



Locus for Probe
Xcdo220
Type
RFLP
Map
Avena-Sorrells-A50.6
[ Show all 8 ]
[ Show Nearby Loci ]
In QTL
QGY.64Lines_4
[ Show all 7 ]
Map Data
Diploid Oat, Cornell2
[ Show all 8 ]
Probe
CDO220
Homology
CAC01690.1e-value: 3.5(AJ297523) Cig protein [Mucor circinelloides]
Image
CDO220 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo220
CDO220

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