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GrainGenes Marker Report: CDO341

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Locus
cdo341
Type
RFLP
Map
Oat-2003-OglexMAM17-5_1941
Oat-2004-P48xP38_12
Oat-KxO/2003-175.94
Wheat, Yr genes and QTL 6B54.9
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat-2003-OglexMAM17-5
Oat-2004-P48xP38
Wheat, Yr genes and QTL
Species
Avena sativa
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark
Marker placement value = 0.38 cM on map Oat-KxO/2003-17
Marker is not a framework marker on map Oat-KxO/2003-17
Possible Orthologs
Xcdo341
[ Show all 7 ]



Probe
CDO341
Locus
Xcdo341-6B
[ Show all 8 ]
Synonym
SynonymHAR35_17284
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439188
BE439256
CDO341_WHE03F11.s1
CDO341_WHE03F11.r1
CN180777
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
0.9
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Data Source
Sorrells, Mark E.96.07



Locus for Probe
CDO341
Type
RFLP
Synonym
Other namecdo341
Map
Oat-2009-KxO_1736
Oat-2016-Consensus-285.2
Oat-2016-KxO_1538.1
Oat-2018-Consensus_Mrg0285.2
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
Xcdo341
Type
RFLP
Map
Avena-Sorrells-D31.3
Oat-2003-OglexMAM17-5_1941
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
Oat-2003-OglexMAM17-5
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
Xcdo341-5A
Type
RFLP
Map
Ta-Synthetic/Opata-GPW-5A44.4
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata, GPW
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
Xcdo341-6B
Type
RFLP
Chromosome
6B
Chromosome Arm
6BL
Map
Ta-Synthetic/Opata-6B19
Ta-Synthetic/Opata-BARC-6B51.4
Ta-Synthetic/Opata-DR-6B17.4
Ta-Synthetic/Opata-gbx-6B73.4
Ta-Synthetic/Opata-GPW-6B63.2
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, DR Genes
Wheat, Synthetic x Opata, gbx RFLP
Wheat, Synthetic x Opata, GPW
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
Xcdo341a
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A27
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
Xcdo341b
Type
RFLP
Chromosome
6B
Map
Wheat-Composite2004-6B140
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]



Locus for Probe
cdo341-6B
Type
RFLP
Chromosome
6B
Map
Wheat_Yr_2021-6B107.26
[ Show Nearby Loci ]
Map Data
Wheat, Yr Update, 2021
Probe
CDO341
Homology
BAB08591.1e-value: 1.3(AB010071) trigger factor-like protein [Arabidopsis thaliana]
BAB08591.1e-value: 8e-15(AB010071) trigger factor-like protein [Arabidopsis thaliana]
Possible Orthologs
cdo341
[ Show all 7 ]

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