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GrainGenes Marker Report: CDO370

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Locus
CDO370
Type
RFLP
Synonym
Other namecdo370
SynonymPOPA1_0883
Chromosome
2H
Chromosome Arm
2HS
Map
Barley-consensus-2003-2H69.4
[ Show all 12 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QBosl.ClSa-2H
Map Data
Barley consensus
[ Show all 12 ]
Species
Avena sativa
Avena sativa L.
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
Number of populations contributing to the placement of CDO370 in the Barley, Consensus 2006 DArT maps = 1
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Marker placement value = 2.94 cM on map Oat-KxO/2003-5
Marker is not a framework marker on map Oat-KxO/2003-5
Possible Orthologs
Xcdo370
Xcdo370-2
Xcdo370-2B
Xcnl.CDO370
cdo370



Probe
CDO370
Locus
Xcdo370-2
[ Show all 6 ]
Synonym
SynonymHAR35_14503
HAR35_14504
HAR35_29816
External Databases
DDBJ
EMBL
GenBank
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
STS
PCR primers
GCT CTC CGC CTG GAT ACA GC
CCC TTG CCC TTC TTC TTC TG
Sequence
BE439107
CDO370_WHE2E0051
CDO370_WHE2E0052
CDO370
Polymorphism
CDO370 EcoRI
CDO370 EcoRV
CDO370 DraI
Linkage Group
[b 2LS]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1
PCR size
1
Clone Vector
pBluSK
BS-SK-
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Blake, Tom
Image
CDO370 BROWS autoradiogram
CDO370 KO autoradiogram
CDO370 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
Blake, Tom95.08.24
ATMI92.09



Locus for Probe
cdo370
Type
RFLP
Map
Wheat, Yr genes and QTL 2B50
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Possible Orthologs
CDO370
Xcdo370
Xcdo370-2
Xcdo370-2B
Xcnl.CDO370



Locus for Probe
Xcdo370
Type
RFLP
Chromosome
2B
Map
Oat-KxO-57.8
Oat-KxO/AFLP-5-30100
Oat-KxO/Q-57.8
Wheat-Composite2004-2B79
[ Show Nearby Loci ]
In QTL
Test weight, KxO-5-a
Test weight, KxO-5-b
Test weight, KxO-5-c
Test weight, KxO-5-d
Test weight, KxO-5-e
Map Data
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Wheat, Composite, 2004
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Image
CDO370 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
CDO370
Xcdo370-2
Xcdo370-2B
Xcnl.CDO370
cdo370



Locus for Probe
Xcdo370-2
Type
RFLP
Chromosome Arm
2S
Map
Triticeae-Sorrells-2116.2
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Possible Orthologs
CDO370
Xcdo370
Xcdo370-2B
Xcnl.CDO370
cdo370



Locus for Probe
Xcdo370-2B
Type
RFLP
Chromosome
2B
Chromosome Arm
2BS
Map
Ta-Synthetic/Opata-2B69.7
Ta-Synthetic/Opata-BARC-2B34.8
Ta-Synthetic/Opata-GPW-2B60.8
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Image
CDO370 SO autoradiogram
Possible Orthologs
CDO370
Xcdo370
Xcdo370-2
Xcnl.CDO370
cdo370



Locus for Probe
Xcnl.CDO370
Type
RFLP
Chromosome
2H
Map
Hordeum-Heun-2H132.3
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO370
Homology
RS8_ORYSAe-value: 2e-2740S RIBOSOMAL PROTEIN S8
Possible Orthologs
CDO370
Xcdo370
Xcdo370-2
Xcdo370-2B
cdo370