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GrainGenes Marker Report: CDO395

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Locus
cdo395
Type
RFLP
Chromosome
3 (3H)
3A
3B
3D
3H
Chromosome Arm
3AS
3BS2AL
3DS
3HS
Map
Barley-Consensus-3H-30.5
[ Show all 12 ]
[ Show Nearby Loci ]
Map Data
3B Physical
[ Show all 13 ]
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
Data Source
Kleinhofs, Andris
Remark
Number of populations contributing to the placement of CDO395 in the Barley, Consensus 2006 DArT maps = 1
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
CDO395(A)
[ Show all 15 ]



Probe
CDO395
Locus
cdo395
[ Show all 16 ]
Synonym
SynonymHAR35_16251
HAR35_16252
HAR35_29914
External Databases
DDBJ
EMBL
GenBank
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
OatUni-ZAPXR
Type
cDNA
STS
PCR primers
ACC CCA TCG GTC TGT CTA TG
AAC TCG GTC GTT ACA AGA GC
Sequence
BE439071
[ Show all 7 ]
Polymorphism
CDO395 EcoRI
Durums CDO395 EcoRI
CDO395 EcoRV
Linkage Group
3S [b 3S]
3S [b 3S]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1
PCR size
1
Clone Vector
pBluSK
BS-SK-
lambda-ZapXR
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Blake, Tom
Image
CDO395 BROWS autoradiogram
CDO395 KO autoradiogram
CDO395 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
Blake, Tom95.08.24
ATMI92.09
Gill, Bikram S.92.09



Locus for Probe
cdo395a
Type
RFLP
Map
Oat-2004-TxM_290
[ Show Nearby Loci ]
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
cdo395b
Type
RFLP
Map
Oat-2002-KxO_3_3881
Oat-2004-TxM_1436
[ Show Nearby Loci ]
Map Data
Oat-2002-KxO
Oat-2004-TxM
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
cdo395x
Type
RFLP
Map
Oat-2001-KxM_323
[ Show Nearby Loci ]
Map Data
Oat-2001-KxM
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395(A)
Type
RFLP
Map
Hordeum-CxS-3H12.98
[ Show Nearby Loci ]
Map Data
Barley, CxS
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395(B)
Type
RFLP
Map Data
Barley, CxS
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395A
Type
RFLP
Synonym
Other namecdo395a
Map
Oat-2009-KxO_325
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-32
Marker is a framework marker on map Oat-KxO/2003-32
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395b
Type
RFLP
Map
Oat-KxO/2003-3+3874.8
Rice-CU-1162.4
Zea-Ahn-5155.4
[ Show Nearby Loci ]
Map Data
Maize, TxCM
Oat, KxO, 2003
Rice, BxOl
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-3+38
Marker is a framework marker on map Oat-KxO/2003-3+38
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395
Type
RFLP
Synonym
Other namecdo395
Map
Oat-2016-Consensus-3134.4
Oat-2018-Consensus_Mrg03134.4
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
CDO395B
Type
RFLP
Synonym
Other namecdo395b
Map
Oat-2009-KxO_1_3_38_break2
Oat-2016-Consensus-1867.7
Oat-2018-Consensus_Mrg1867.7
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcdo395
Type
RFLP
Chromosome
3A
3R
Chromosome Arm
3HS
3RS
Map
Hbulbosum-PB1xPB11-322
Rye-2009-Consensus-3R71.5
Secale-ExR-341.9
Wheat-Composite2004-3A36
[ Show Nearby Loci ]
Map Data
H. bulbosum, PB1 x PB11
Rye, ExR
Rye_2009_consensus
Wheat, Composite, 2004
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcdo395-3
Type
RFLP
Chromosome Arm
3S
Map
Triticeae-Sorrells-330.1
Triticeae-Sorrells-3-update36.5
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcdo395-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AS
Map
3A, CNN x WI58.4
[ Show all 8 ]
[ Show Nearby Loci ]
Map Data
3A, CNN x WI
[ Show all 8 ]
Species
Triticum aestivum
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Image
CDO395 SO autoradiogram
Reference
ReferenceOtto CD et al. (2002) Genetic dissection of a major Fusarium head blight QTL in tetraploid wheat Plant Molecular Biology 48:625-632.
ReferenceParker GD et al. (1999) Mapping loci associated with milling yield in wheat (Triticum aestivum L.) Molecular Breeding 5:561-568.
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcdo395a
Type
RFLP
Map
Avena-Sorrells-A112.3
Avena-Yu-B355.5
Oat-KxO-3236
Oat-KxO/AFLP-25-3276
Oat-KxO/Q-3235.9
[ Show Nearby Loci ]
In QTL
Groat percentage, KxO-32-b
Test weight, KxO-32-c
Map Data
Diploid Oat, AFLP
Diploid Oat, Cornell2
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Image
CDO395 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcdo395b
Type
RFLP
Map
Avena-Sorrells-B56.5
Avena-Yu-A75.1
Oat-KxO-338.2
[ Show Nearby Loci ]
Map Data
Diploid Oat, AFLP
Diploid Oat, Cornell2
Oat, KxO
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Image
CDO395 KO autoradiogram
Possible Orthologs
cdo395
[ Show all 15 ]



Locus for Probe
Xcnl.CDO395
Type
RFLP
Chromosome
3H
Map
Hordeum-Heun-3H76
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO395
Homology
NP_043787.1e-value: 0.98capsid protein [Human herpesvirus 7]
YPT2_MAIZEe-value: 3e-14GTP-BINDING PROTEIN YPTM2
Possible Orthologs
cdo395
[ Show all 15 ]