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GrainGenes Marker Report: CDO419

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Locus
cdo419
Type
RFLP
Synonym
SynonymPOPA2_0829
Map
Hordeum-CxH-5H203.11
Oat-KxO/2003-22_44+1897.6
[ Show Nearby Loci ]
Map Data
Barley, CxH
Oat, KxO, 2003
Probe
CDO419
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-22_44+18
Marker is a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
CDO0419
[ Show all 24 ]



Probe
CDO419
Locus
CDO419c
[ Show all 24 ]
Synonym
SynonymHAR35_34450
HAR35_36597
HAR35_432
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439269
CDO419_WHE04F06.s1
Polymorphism
CDO419 EcoRI
Linkage Group
[b 2LH, 6H]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.8
PCR size
1.8
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO419 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
cdo419p
Type
RFLP
Map
Oat-2004-TxM_1513
[ Show Nearby Loci ]
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
cdo419xp
Type
RFLP
Map
Oat-2004-TxM_56
[ Show Nearby Loci ]
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO0419
Type
RFLP
Map
Avena-Wise-C109.4
[ Show Nearby Loci ]
Map Data
Diploid Oat, Iowa St.
Probe
CDO419
Possible Orthologs
cdo419
[ Show all 24 ]



Locus for Probe
CDO419(A)
Type
RFLP
Map
Hordeum-GxH-5H246.79
[ Show Nearby Loci ]
Map Data
Barley, GxH
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419(B)
Type
RFLP
Map
Hordeum-GxH-1H176.08
[ Show Nearby Loci ]
Map Data
Barley, GxH
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419A
Type
RFLP
Chromosome
1H
Map
Barley-consensus-2003-1H63.8
Barley-Consensus2-6H96
Hordeum-Bins-6H100
[ Show Nearby Loci ]
Map Data
Barley consensus 2
Barley consensus 2003
Barley, BinMap 2005
Oat, KxO, 2003
Oat-2009-KxO
Probe
CDO419
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Marker placement value = 0.00 cM on the Oat-KxO/2003 maps
Marker is unlinked on the Oat-KxO/2003 maps
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419B
Type
RFLP
Chromosome
5H
Map
Barley-consensus-2003-5H66.8
Barley-Consensus2-3H72
Hordeum-Bins-3H101
Oat-2009-KxO_24_26_3432
Oat-KxO/2003-24_26_3441.8
[ Show Nearby Loci ]
Map Data
Barley consensus 2
Barley consensus 2003
Barley, BinMap 2005
Oat, KxO, 2003
Oat-2009-KxO
Probe
CDO419
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Marker placement value = 13.50 cM on map Oat-KxO/2003-24_26_34
Marker is not a framework marker on map Oat-KxO/2003-24_26_34
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419c
Type
RFLP
Chromosome
5H
Map
Hordeum-Bins-5H165
Hordeum-Giese2-5H159
[ Show Nearby Loci ]
Map Data
Barley, BinMap 2005
Barley, VGxTP
Probe
CDO419
Data Source
Kleinhofs, Andris
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
cdo419d
Type
RFLP
Map
Oat-KxO/2003-21+46_31+4021.5
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO419
Remark
Marker placement value = 6.38 cM on map Oat-KxO/2003-21+46_31+40
Marker is not a framework marker on map Oat-KxO/2003-21+46_31+40
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
cdo419e
Type
RFLP
Map
Oat-KxO/2003-22_44+1872.5
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO419
Remark
Marker placement value = 2.78 cM on map Oat-KxO/2003-22_44+18
Marker is not a framework marker on map Oat-KxO/2003-22_44+18
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
cdo419f
Type
RFLP
Map
Oat-KxO/2003-24_26_34129
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO419
Remark
Marker placement value = 9.59 cM on map Oat-KxO/2003-24_26_34
Marker is not a framework marker on map Oat-KxO/2003-24_26_34
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcdo419a
Type
RFLP
Map
Rye-2009-Consensus-3R57.1
[ Show Nearby Loci ]
Map Data
Rye_2009_consensus
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419D
Type
RFLP
Synonym
Other namecdo419d
Map
Oat-2009-KxO_21_46_31_4022
Oat-2016-Consensus-1160.5
Oat-2016-KxO_2410.8
Oat-2018-Consensus_Mrg1160.5
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419F
Type
RFLP
Synonym
Other namecdo419f
Map
Oat-2009-KxO_24_26_3483
Oat-2016-Consensus-2014.7
Oat-2016-KxO_307.8
Oat-2018-Consensus_Mrg2014.7
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419
Type
RFLP
Synonym
Other namecdo419
Map
Oat-2009-KxO_22_44_1894
Oat-2016-Consensus-20156.7
Oat-2016-KxO_1198
Oat-2018-Consensus_Mrg20156.7
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419E
Type
RFLP
Synonym
Other namecdo419e
Map
Oat-2009-KxO_22_44_1874
Oat-2016-Consensus-20196.3
Oat-2018-Consensus_Mrg20196.3
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
CDO419d
Type
RFLP
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcdo419
Type
RFLP
Map
Oat-1999-KxM-Oil_220
Oat-KxO-2276.1
[ Show Nearby Loci ]
In QTL
QOil.KxM-Oil_22
Map Data
Oat, KxO
Oat-1999-KxM-Oil
Probe
CDO419
Image
CDO419 KO autoradiogram
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcdo419A
Type
RFLP
Chromosome
3R
Chromosome Arm
3RS
Map
Secale-ExR-312.8
[ Show Nearby Loci ]
Map Data
Rye, ExR
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcdo419B
Type
RFLP
Chromosome
5R
Chromosome Arm
5RS
Map
Rye-2009-Consensus-5R3.4
Secale-ExR-57.7
[ Show Nearby Loci ]
Map Data
Rye, ExR
Rye_2009_consensus
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcdo419C
Type
RFLP
Chromosome
5R
Map
Rye-2009-Consensus-5R1.3
Secale-ExR-58.7
[ Show Nearby Loci ]
Map Data
Rye, ExR
Rye_2009_consensus
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcnl.CDO419A
Type
RFLP
Chromosome
6H
Map
Hordeum-Heun-6H99
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]



Locus for Probe
Xcnl.CDO419B
Type
RFLP
Chromosome
3H
Map
Hordeum-Heun-3H173.5
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO419
Possible Orthologs
CDO0419
[ Show all 24 ]