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GrainGenes Marker Report: CDO537

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Locus
CDO537
Type
RFLP
Synonym
SynonymAz94 (Hordeum)
POPA3_0251
Chromosome
2H
Chromosome Arm
2HS
Map
Barley-Consensus-2H-3.5
[ Show all 13 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 13 ]
Probe
CDO537
Associated Gene
Az94 (Hordeum)
yst4 (Hordeum)
Homology
T51536e-value: 7e-08hypothetical protein T20K14_190 - Arabidopsis thaliana
Gene Class
Yellow striped leaf
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceKleinhofs A (2000) Coordinator's report: integrating molecular and morphological/physiological marker maps. [electronic resource] Barley Genetics Newsletter 32:152-159.
Data Source
Blake, Tom05.04.19
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs
Xcdo537-2
Xcnl.CDO537



Gene Associated with Locus
yst4 (Hordeum)
Full Name
Yellow streak 4
Gene Class
Yellow striped leaf
Locus
CDO537
yst4
URL
http://ace.untamo.net/cgi-bin/ace/tree/default?class=Gene&name=yst4+(Hordeum)
Chromosome
2H
Chromosome Arm
2HL
BGS Photo
BGS85a, Yellow streak 4  [ BGS Database ]
BGS85b, Yellow streak 4  [ BGS Database ]
BGS85d, Yellow streak 4  [ BGS Database ]
Data Source
Franckowiak, Jerome D.96.10



Gene Associated with Locus
Az94 (Hordeum)
Locus
Az94
CDO537



Probe
CDO537
Locus
CDO537
Xcdo537-2
Xcnl.CDO537
Synonym
SynonymHAR35_18816
HAR35_21741
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439137
CDO537_WHE2H0091
CDO537_WHE2H0092
CDO537-5
CDO537-3
Linkage Group
[b 2LS]
2
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
2.1
PCR size
2.1
Clone Vector
pBluSK
pBS
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Data Source
Sorrells, Mark E.96.07
ATMI92.09
Kleinhofs, Andris96.05.08



Locus for Probe
Xcdo537-2
Type
RFLP
Chromosome Arm
2S
Map
Triticeae-Sorrells-2119.2
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO537
Homology
T51536e-value: 7e-08hypothetical protein T20K14_190 - Arabidopsis thaliana
Possible Orthologs
CDO537
Xcnl.CDO537



Locus for Probe
Xcnl.CDO537
Type
RFLP
Chromosome
2H
Map
Hordeum-Heun-2H146
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO537
Homology
T51536e-value: 7e-08hypothetical protein T20K14_190 - Arabidopsis thaliana
Possible Orthologs
CDO537
Xcdo537-2