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GrainGenes Marker Report: CDO54

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Locus
CDO54
Type
RFLP
Synonym
Other namecdo54
Map
Oat-2001-KxO_1542.5
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 6 ]
Species
Avena sativa
Probe
CDO54
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-15
Marker is a framework marker on map Oat-KxO/2003-15
Possible Orthologs
Xcdo54
Xcdo54-3
Xcdo54-3A
cdo54
CDO54B



Probe
CDO54
Locus
Xcdo54-3
[ Show all 7 ]
Synonym
SynonymHAR35_3418
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439052
[ Show all 6 ]
Polymorphism
CDO54 EcoRI
CDO54 EcoRV
CDO54 DraI
CDO54 HindIII
CDO54 XbaI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
PCR size
1.9
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO54 KO autoradiogram
CDO54 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
cdo54
Type
RFLP
Map
Oat-2001-KxM_150
Oat-2003-OglexMAM17-5_2210
RGA-2013_KO1543
[ Show Nearby Loci ]
Map Data
Oat-2001-KxM
Oat-2003-OglexMAM17-5
Oat-2013-KxO-RGA
Species
Avena sativa
Probe
CDO54
Possible Orthologs
CDO54
Xcdo54
Xcdo54-3
Xcdo54-3A
CDO54B



Locus for Probe
CDO54B
Type
RFLP
Map
Oat-2006-OxT_Pc58_167.8
[ Show Nearby Loci ]
Map Data
Oat-2006-OxT_Pc58
Probe
CDO54
Possible Orthologs
CDO54
Xcdo54
Xcdo54-3
Xcdo54-3A
cdo54



Locus for Probe
HI006C4
Probe
CA502510
CDO54



Locus for Probe
Xcdo54
Type
RFLP
Chromosome
3A
Map
Avena-Sorrells-C37
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
[ Show all 7 ]
Probe
CDO54
Image
CDO54 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
CDO54
Xcdo54-3
Xcdo54-3A
cdo54
CDO54B



Locus for Probe
Xcdo54-3
Type
RFLP
Chromosome Arm
3L
Map
Triticeae-Sorrells-364.2
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO54
Possible Orthologs
CDO54
Xcdo54
Xcdo54-3A
cdo54
CDO54B



Locus for Probe
Xcdo54-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
Map
Ta-Synthetic/Opata-3A64.3
Ta-Synthetic/Opata-GPW-3A48.7
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, GPW
Probe
CDO54
Possible Orthologs
CDO54
Xcdo54
Xcdo54-3
cdo54
CDO54B

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