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GrainGenes Marker Report: CDO583

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Locus
cdo583
Type
RFLP
Chromosome
5H
7H
Chromosome Arm
5HL
Map
Barley-consensus-2003-7H125.9
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
3B Physical
[ Show all 6 ]
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
Xcdo583-3B
[ Show all 6 ]



Probe
CDO583
Locus
cdo583
[ Show all 6 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439192
CDO583_WHE03A04.r1
Polymorphism
CDO583 XbaI
CDO583 EcoRI
CDO583 EcoRV
CDO583 HindIII
CDO583 DraI
Linkage Group
[b 7L]
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.7
PCR size
1.7
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO583 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09



Locus for Probe
Xcdo583
Type
RFLP
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Possible Orthologs
cdo583
[ Show all 6 ]



Locus for Probe
Xcdo583-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
Map
Ta-Synthetic/Opata-3B130.4
Ta-Synthetic/Opata-BARC-3B79.5
Ta-Synthetic/Opata-GPW-3B85.9
Ta-Synthetic/Opata-update-3B161.7
[ Show Nearby Loci ]
Map Data
Wheat, Synthetic x Opata  [ GBrowser ]
Wheat, Synthetic x Opata, BARC
Wheat, Synthetic x Opata, GPW
Wheat, Synthetic x Opata, update
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Possible Orthologs
cdo583
[ Show all 6 ]



Locus for Probe
Xcdo583a
Type
RFLP
Chromosome
3B
Map
Wheat-Composite2004-3B21
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Possible Orthologs
cdo583
[ Show all 6 ]



Locus for Probe
Xcdo583b
Type
RFLP
Chromosome
3B
Map
Wheat-Composite2004-3B58
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Possible Orthologs
cdo583
[ Show all 6 ]



Locus for Probe
Xcnl.CDO583
Type
RFLP
Chromosome
5H
Map
Hordeum-Heun-5H230.8
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
CDO583
Homology
TBB1_WHEATe-value: 6e-38TUBULIN BETA-1 CHAIN (BETA-1 TUBULIN)
Possible Orthologs
cdo583
[ Show all 6 ]

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