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GrainGenes Marker Report: CDO638

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Locus
cdo638
Type
RFLP
Map
Oat-2002-KxO_1344
Oat-2004-TxM_84
Oat-KxO/2003-1322.4
Oat-MxN_2005-160
Wheat, Yr genes and QTL 3A20
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat, MxN, genetic 2005
Oat-2002-KxO
Oat-2004-TxM
Wheat, Yr genes and QTL
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-13
Marker is a framework marker on map Oat-KxO/2003-13
Possible Orthologs
Xcdo638
Xcdo638-3
Xcdo638-3A
CDO638
cdo638x



Probe
CDO638
Locus
Xcdo638-3A
[ Show all 6 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
Type
cDNA
Sequence
BE439278
CDO638_WHE04H08.s1
Polymorphism
CDO638 EcoRV
CDO638 XbaI
CDO638 EcoRI
CDO638 HindIII
Source Species
Avena sativa
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
PCR size
1.4
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO638 KO autoradiogram
CDO638 SO autoradiogram
Data Source
Sorrells, Mark E.96.07



Locus for Probe
cdo638x
Type
RFLP
Map
Oat-2004-TxM_70
[ Show Nearby Loci ]
Map Data
Oat-2004-TxM
Species
Avena sativa
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Possible Orthologs
cdo638
Xcdo638
Xcdo638-3
Xcdo638-3A
CDO638



Locus for Probe
CDO638
Type
RFLP
Synonym
Other namecdo638
Map
Oat-2009-KxO_4_12_1341
Oat-2016-Consensus-2338
Oat-2018-Consensus_Mrg2338
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Possible Orthologs
cdo638
Xcdo638
Xcdo638-3
Xcdo638-3A
cdo638x



Locus for Probe
Xcdo638
Type
RFLP
Chromosome
3A
Map
Avena-Sorrells-C53.9
Oat-KxO-1354.1
Oat-KxO/AFLP-1337
Oat-KxO/Q-1354.1
Wheat-Composite2004-3A61
[ Show Nearby Loci ]
In QTL
Test weight, KxO-13-c
Map Data
Diploid Oat, Cornell2
Oat, KxO
Oat, KxO, AFLP
Oat, KxO/QTL
Wheat, Composite, 2004
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Image
CDO638 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo638
Xcdo638-3
Xcdo638-3A
CDO638
cdo638x



Locus for Probe
Xcdo638-3
Type
RFLP
Chromosome Arm
3S
Map
Triticeae-Sorrells-352.4
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Possible Orthologs
cdo638
Xcdo638
Xcdo638-3A
CDO638
cdo638x



Locus for Probe
Xcdo638-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AS
Map
3A, CNN x WI76.9
[ Show all 7 ]
[ Show Nearby Loci ]
In QTL
QTkwt.sha-3A.2
Map Data
3A, CNN x WI
[ Show all 7 ]
Probe
CDO638
Homology
AAF46265.1e-value: 4.0(AE003441) CHES-1-like gene product [Drosophila melanogaster]
Image
CDO638 SO autoradiogram
Possible Orthologs
cdo638
Xcdo638
Xcdo638-3
CDO638
cdo638x