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GrainGenes Marker Report: CDO666

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Locus
CDO666
Type
RFLP
Chromosome
2D5B
Chromosome Arm
2DS
Map Data
Wheat chromosome arm map
Wheat sprouting markers
Probe
CDO666
Possible Orthologs
CDO666B
[ Show all 6 ]



Probe
CDO666
Locus
CDO666
[ Show all 7 ]
Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remarks
OatUni-ZAPXR [c]
Type
cDNA
Sequence
CN200320
Linkage Group
2S, 5L, 7S
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Insert Size
1.6
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Clone Location
Sorrells, Mark E.
Data Source
ATMI92.09



Locus for Probe
CDO666B
Type
RFLP
Chromosome
5A
5B
5D
Map Data
Wheat chromosome arm map
Probe
CDO666
Possible Orthologs
CDO666
[ Show all 6 ]



Locus for Probe
CDO666C
Type
RFLP
Chromosome
7A
7B
7D
Chromosome Arm
7AS
7BS
Map Data
Wheat chromosome arm map
Probe
CDO666
Possible Orthologs
CDO666
[ Show all 6 ]



Locus for Probe
CDO666D
Type
RFLP
Map Data
Wheat chromosome arm map
Probe
CDO666
Possible Orthologs
CDO666
[ Show all 6 ]



Locus for Probe
cdo666x
Type
RFLP
Map
Oat-2004-P39xP48_12
[ Show Nearby Loci ]
Map Data
Oat-2004-P39xP48
Species
Avena sativa
Probe
CDO666
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark
The 'x' in this locus name indicates that alternate restriction enzymes were used to generate the polymorphism in this population
Possible Orthologs
CDO666
[ Show all 6 ]



Locus for Probe
cdo666y
Type
RFLP
Map
Oat-2004-P39xP48_51
Oat-2004-P48xP38_30
[ Show Nearby Loci ]
Map Data
Oat-2004-P39xP48
Oat-2004-P48xP38
Species
Avena sativa
Probe
CDO666
Reference
ReferenceWight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361.
Remark
The 'y' in this locus name indicates that alternate restriction enzymes were used to generate the polymorphism in this population
Possible Orthologs
CDO666
[ Show all 6 ]



Locus for Probe
Xcdo666
Type
RFLP
Chromosome
5A
Map
Wheat-Composite2004-5A46
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CDO666
Possible Orthologs
CDO666
[ Show all 6 ]

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