Query (optional)   in Class  

GrainGenes Marker Report: CDO677

[ Printable Version ]  [ Submit comment/correction ]

Locus
CDO677
Type
RFLP
Chromosome
4H
5A
5B
5D
Chromosome Arm
5AS
5BS
5DS
Map
Barley-consensus-2003-4H73
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2003
[ Show all 8 ]
Species
Avena sativa
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Data Source
Langridge, Peter J.
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-29_43
Marker is a framework marker on map Oat-KxO/2003-29_43
Possible Orthologs
cdo677a
[ Show all 9 ]



Probe
CDO677
Locus
Xcdo677
[ Show all 10 ]
Synonym
SynonymHAR35_11857
HAR35_28766
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
BE439194
CDO677_WHE03B02.r1
Polymorphism
CDO677 EcoRI
CDO677 EcoRV
CDO677 DraI
Linkage Group
5S
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Triticum aestivum
Source Germplasm
Brooks CIav9260
Source Tissue
etiolated leaf
Insert Size
1.5
PCR size
1.5
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
GrainGenes Probe Repository
Clone Authority
Sorrells, Mark E.
Image
CDO677 KO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09
Smith-White, Brian



Locus for Probe
cdo677a
Type
RFLP
Map
Oat-KxO/2003-3011.7
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Remark
Marker placement value = 5.84 cM on map Oat-KxO/2003-30
Marker is not a framework marker on map Oat-KxO/2003-30
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
CDO677B
Type
RFLP
Map Data
Wheat chromosome arm map
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
CSU001CDO677-1
Type
RFLP
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
CSU001CDO677-2
Type
RFLP
Chromosome Arm
5AS
Map
Chinese_Spring_Deletion_5A-0.69
[ Show Nearby Loci ]
Breakpoint Interval
5AS1-0.40-0.98*
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
CSU001CDO677-3
Type
RFLP
Chromosome Arm
5DS
Map
Chinese_Spring_Deletion_5D-0.315
[ Show Nearby Loci ]
Breakpoint Interval
C-5DS1-0.63
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
CDO677A
Type
RFLP
Synonym
Other namecdo677a
Map
Oat-2009-KxO_5_30107
Oat-2016-Consensus-6104.5
Oat-2018-Consensus_Mrg06104.5
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
Xcdo677a
Type
RFLP
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
Xcdo677
Type
RFLP
Chromosome
5D
Chromosome Arm
5DS
Map
Ta-Physical-Gill-5ABD-40
Ta-Physical-Gill-5D-1.36
Tm-Dubcovsky2-5A0
[ Show Nearby Loci ]
Breakpoint Interval
5DS-1/5DS-4
5S-0.34-0.45
Map Data
Oat, KxO
T. monococcum, DV92 x G3116
Wheat, Physical
Species
Triticum aestivum
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Image
CDO677 KO autoradiogram
Reference
ReferenceBoyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus was completely linked to Xcdo749, X5SDna-5A, Xpsr326, Xwg341, Xpsr929, Xpsr628, Xpsr118, XksuH8, Xcdo1338, Xpsr360, Xwg541, Xcdo1049, Xbcd204, Xmwg645, Xabc706, and Xtam40. Segregation data are listed under Xcdo749.
Possible Orthologs
CDO677
[ Show all 9 ]



Locus for Probe
Xcdo677-5D
Type
RFLP
In QTL
QSd.ksu-5D.1
Probe
CDO677
Homology
BAB11619.1e-value: 2e-10(AB016875) gene_id:K9D7.6~unknown protein [Arabidopsis thaliana]
Possible Orthologs
CDO677
[ Show all 9 ]