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GrainGenes Marker Report: CDO718

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Locus
cdo718
Type
RFLP
Chromosome
3A
3B
3D
3H
Chromosome Arm
3AL
3BL
3DL
3HL
Map
Barley-consensus-2003-3H62.3
[ Show all 14 ]
[ Show Nearby Loci ]
Map Data
3B Physical
[ Show all 15 ]
Probe
CDO718
Data Source
Kleinhofs, Andris
Langridge, Peter J.
Remark
This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Possible Orthologs
cdo718a
[ Show all 13 ]
Probe
CDO718
Locus
cdo718
[ Show all 14 ]
Reference
ReferenceHeun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
Remarks
Uni-ZAP XR library
OatUni-ZAPXR [c]
Type
cDNA
Sequence
AA231715
Polymorphism
CDO718 EcoRI
Durums CDO718 EcoRI
CDO718 DraI
CDO718 XbaI
Linkage Group
3L
Insert Enzyme
EcoRI
XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1.2
PCR size
1.2
Clone Vector
pBluSK
Excision Enzyme
EcoRI
XhoI
Vector PCR primers
M13forward
M13reverse
Vector Amplification
94 C for 60 sec, 50 C 40 sec, 72 C 60 sec, 34 times; 94 C for 60 sec, 50 C 40 sec, 72 C 10 min, 1 time
Antibiotic
Ampicillin
Clone Location
Sorrells, Mark E.
Clone Authority
Sorrells, Mark E.
Image
CDO718 BROWS autoradiogram
CDO718 KO autoradiogram
CDO718 SO autoradiogram
Data Source
Sorrells, Mark E.96.07
ATMI92.09


Locus for Probe
cdo718a
Type
RFLP
Map
Oat-2002-OxT-QTL_828.5
Oat-2003-OglexMAM17-5_2318
Oat-KxO/2003-684.3
Oat-OxT-829.4
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
Oat, OxT
Oat-2002-OxT-QTL
Oat-2003-OglexMAM17-5
Probe
CDO718
Remark
Marker placement value = 7.56 cM on map Oat-KxO/2003-6
Marker is not a framework marker on map Oat-KxO/2003-6
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
cdo718b
Type
RFLP
Map
Oat-2002-KxO_429
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Oat, KxO, 2003
[ Show all 7 ]
Probe
CDO718
Remark
Marker placement value = 0.00 cM on map Oat-KxO/2003-4_12
Marker is a framework marker on map Oat-KxO/2003-4_12
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
cdo718c
Type
RFLP
Map
Oat-2002-OxT-QTL_828.5
Oat-OxT-829.4
[ Show Nearby Loci ]
Map Data
Oat, OxT
Oat-2002-OxT-QTL
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
CDO718B
Type
RFLP
Synonym
Other namecdo718b
Map
Oat-2001-KxO_4-1232.75
Oat-2009-KxO_4_12_13144
Oat-2016-Consensus-157.2
Oat-2016-KxO_1832.6
Oat-2018-Consensus_Mrg0157.2
[ Show Nearby Loci ]
Map Data
Oat-2001-KxO
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Avena sativa L.
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
CDO718A
Type
RFLP
Synonym
Other namecdo718a
Map
Oat-2009-KxO_695
Oat-2016-Consensus-129.2
Oat-2016-KxO_5130
Oat-2018-Consensus_Mrg129.2
[ Show Nearby Loci ]
Map Data
Oat-2009-KxO
Oat-2016-Consensus
Oat-2016-KxO
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
CDO718C
Type
RFLP
Synonym
Other namecdo718c
Map
Oat-2016-Consensus-129.2
Oat-2018-Consensus_Mrg129.2
[ Show Nearby Loci ]
Map Data
Oat-2016-Consensus
Oat-2018-Consensus
Species
Avena sativa
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718
Type
RFLP
Chromosome
2R
3B
Chromosome Arm
2RS
Map
Avena-Sorrells-A23.5
Rye-2009-Consensus-2R4.5
Secale-UxE-23.1
Wheat-Composite2004-3B58
[ Show Nearby Loci ]
Map Data
Diploid Oat, Cornell2
Rye, UC90 x E-line
Rye_2009_consensus
Wheat, Composite, 2004
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718-3
Type
RFLP
Map
Triticeae-Sorrells-3-update58.2
[ Show Nearby Loci ]
Map Data
Triticeae consensus
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718-3A
Type
RFLP
Chromosome
3A
Chromosome Arm
3AL
Map
Tturgidum-JKxC-3A94.5
Tturgidum-JKxC2-3A61.6
[ Show Nearby Loci ]
Map Data
T. turgidum, JK x Cham1
T. turgidum, JK x Cham1, 2
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718-3B
Type
RFLP
Chromosome
3B
Chromosome Arm
3BL
3BS
Map
Ta-Synthetic/Opata-3B131.1
[ Show all 7 ]
[ Show Nearby Loci ]
Map Data
Wheat, SxS, FHB QTL
[ Show all 7 ]
Probe
CDO718
Reference
ReferenceWaldron BL et al. (1999) RFLP mapping of QTL for Fusarium head blight resistance in wheat Crop Science 39:805-811.
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718A
Type
RFLP
Chromosome
3A
Map
Oat-2002-OxT-QTL_828.5
Oat-2003-OglexMAM17-5_2318
Oat-KxO-612.7
Wheat-Composite2004-3A43
[ Show Nearby Loci ]
Map Data
Oat, KxO
Oat-2002-OxT-QTL
Oat-2003-OglexMAM17-5
Wheat, Composite, 2004
Probe
CDO718
Image
CDO718 KO autoradiogram
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
Xcdo718B
Type
RFLP
Chromosome
3A
Map
Oat-1996-KxO_431
[ Show all 7 ]
[ Show Nearby Loci ]
In QTL
QPc-PC59E.KxO-4
QPc-PC59Q.KxO-4
Test weight, KxO-4-a
Test weight, KxO-4-b
Map Data
Oat, KxO
[ Show all 7 ]
Probe
CDO718
Image
CDO718 KO autoradiogram
Reference
ReferenceJin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo718
[ Show all 13 ]
Locus for Probe
cdo718-3B
Type
RFLP
Chromosome
3B
Map
Wheat_Yr_2021-3B109
[ Show Nearby Loci ]
Map Data
Wheat, Yr Update, 2021
Probe
CDO718
Possible Orthologs
cdo718
[ Show all 13 ]

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