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GrainGenes Marker Report: CFD23

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Probe
CFD23
Locus
Xcfd23-4D
Xcfd23
Lr67/Yr46/Sr55/Pm46/Ltn3
cfd23
cfd023
Reference
ReferenceHiebert CW et al. (2010) An introgression on wheat chromosome 4DL in RL6077 (Thatcher*6/PI 250413) confers adult plant resistance to stripe rust and leaf rust (Lr67) Theoretical and Applied Genetics 121:1083-1091.
ReferenceGuyomarc'h H et al. (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat Theoretical and Applied Genetics 104:1164-1172.
ReferenceHiebert CW MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Leaf Rust Resistance. Lr67 MAS Wheat. Marker Assisted Selection in Wheat.
Remarks
Quality Score = B
Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems)
Amplifies motif: (AGT)23(GCA)3(GTA)8
Regularity of motif is imperfect
Type
PCR
SSR
PCR primers
Forward 5' TAGCAGTAGCAGCAGCAGGA 3'
Reverse 5' GCAAGGAAGAGTGTTCAGCC 3'
SSR size
187
Amplification Conditions
5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group
4D
Source Species
Aegilops tauschii
Data Source
Sourdille, Pierre



Locus for Probe
Lr67/Yr46/Sr55/Pm46/Ltn3
Type
Gene
Chromosome
4D
Map
Wheat, Yr genes and QTL 4D49.5
[ Show Nearby Loci ]
In QTL
Yr46/Lr67
Map Data
Wheat, Yr genes and QTL
Probe
CFD23
CFD71
Linked QTL
Yr46/Lr67
Associated Gene
Lr67 (Triticum)
Ltn3 (Triticum)
Pm46 (Triticum)
Sr55 (Triticum)
Yr46 (Triticum)
Gene Class
Leaf tip necrosis
[ Show all 6 ]
Reference
ReferenceHerrera-Foessel SA et al. (2014) Lr67/Yr46 confers adult plant resistance to stem rust and powdery mildew in wheat Theoretical and Applied Genetics 127:781-789.
ReferenceHerrera-Foessel SA et al. (2011) New slow-rusting leaf rust and stripe rust resistance genes Lr67 and Yr46 in wheat are pleiotropic or closely linked Theoretical and Applied Genetics 122:239-249.
ReferenceHiebert CW et al. (2010) An introgression on wheat chromosome 4DL in RL6077 (Thatcher*6/PI 250413) confers adult plant resistance to stripe rust and leaf rust (Lr67) Theoretical and Applied Genetics 121:1083-1091.
ReferenceHiebert CW MAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Leaf Rust Resistance. Lr67 MAS Wheat. Marker Assisted Selection in Wheat.



Locus for Probe
cfd23
Type
Microsatellite
Map
Wheat, Yr genes and QTL 4D41.8
Wheat_Yr_2021-4D71.29
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Wheat, Yr Update, 2021
Probe
CFD23
Possible Orthologs
Xcfd23
cfd023



Locus for Probe
cfd023
Type
Microsatellite
Probe
CFD23
Possible Orthologs
Xcfd23
cfd23



Locus for Probe
Xcfd23
Type
Microsatellite
Chromosome
4D
Map
Wheat-Composite2004-4D45
[ Show Nearby Loci ]
Map Data
Wheat, Composite, 2004
Probe
CFD23
Possible Orthologs
cfd23
cfd023



Locus for Probe
Xcfd23-4D
Type
Microsatellite
Chromosome
4D
Map
Chinese_Spring_Deletion_SSR_4D0.155
Ta-Courtot/CS-GPW-4D4
Ta-SSR-2004-4D32.9
[ Show Nearby Loci ]
Breakpoint Interval
C-4DL9-0.31
Map Data
Wheat, Consensus SSR, 2004
Wheat, Courtot x Chinese Spring, GPW
Wheat, Physical, SSR
Probe
CFD23
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xcfd223
Xcfd223-2A
Xcfd0223-3D
Xcfd223-3D

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