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GrainGenes Marker Report: EBmac755

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Locus
EBmac755
Type
Microsatellite
Chromosome
7H
Map
Barley-consensus-2003-7H145.1
Hordeum-Consensus2006-DArT-7H138.8
Hordeum-IxF-SSR-7H127.3
[ Show Nearby Loci ]
QTL with Locus Marker
QNba-CISt-7H
QNba-KeGa-7H
QNbs-CISt-7H
QNbs-KeGa-7H
Map Data
Barley consensus 2003
Barley, Consensus 2006, DArT
Barley, Igri x Franka, SSR
Probe
EBmac755
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Data Source
Langridge, Peter J.
Remark
Number of populations contributing to the placement of EBmac755 in the Barley, Consensus 2006 DArT maps = 2
Possible Orthologs
EBmac0755



Probe
EBmac755
Locus
EBmac0755
EBmac755
Synonym
Other nameEBmac0755
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remarks
Insert contains repeat (AC)16
Quality = 2: Single product, relatively strong stutter bands
Diversity Index (DI) = 0.72
Type
PCR
SSR
PCR primers
5' AGCCTTGTGTATCAGGACA 3'
5' CTGCTGGTGTTCTCTAAAAGT 3'
AGCCTTGTGTATCAGGACA
CTGCTGGTGTTCTCTAAAAGT
SSR size
143
Amplification Conditions
1 cycle of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 30 cycles of 1 min @ 94C, 1 min @ 55C, 1 min @ 72C, 1 cycle of 5 mins @ 72C.
Source Species
Hordeum vulgare



Locus for Probe
EBmac0755
Type
Microsatellite
Chromosome
7H
Map
Barley, B73xCPI-7H155.9
[ Show all 6 ]
[ Show Nearby Loci ]
In QTL
QHea.pil-7H.4
QHei.pil-7H.6
QYld.pil-7H.3
Map Data
Barley, AxHs/QTL
[ Show all 6 ]
Species
Hordeum vulgare
Probe
EBmac0755
EBmac755
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRamsay L et al. (2000) A simple sequence repeat-based linkage map of barley Genetics 156:1997-2005.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 7 ]
Possible Orthologs
EBmac755

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