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GrainGenes Marker Report: GBM1042

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Locus
GBM1042
Type
Microsatellite
Chromosome
1H
Map
Hordeum-Consensus2006-DArT-1H40.5
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley, Consensus 2006, DArT
[ Show all 6 ]
Species
Hordeum vulgare
Probe
GBM1042
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceThiel T et al. (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) Theoretical and Applied Genetics 106:411-422.
Remark
Number of populations contributing to the placement of GBM1042 in the Barley, Consensus 2006 DArT maps = 1
[ Show all 7 ]



Probe
GBM1042
Locus
GBM1042
GBM1042-1H
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceThiel T et al. (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) Theoretical and Applied Genetics 106:411-422.
Remarks
Primer sequences for this SSR are proprietary, those interested should contact Andreas Graner
Clone HW04G11V
Type
SSR
EST
PCR primers
available upon request to authors: graner@ipk-gatersleben.de
Amplification Conditions
3 min at 94 deg C; 45 cycles with 30 sec at 94 deg C, 30 sec at 60 deg C (touchdown of 0.5 deg C / cycle for initial 10 cycles - final annealing of 55 deg C for remaining 35 cycles), 30 sec at 72 deg C; and a final extension step of 5 min at 72 deg C
Sequence
AL504166
DNA Library
IPK-HW
Source Species
Hordeum vulgare
Source Germplasm
Barke (barley)
Clone Location
Graner, Andreas
Data Source
Graner, Andreas
Stein, Nils2006.10



Locus for Probe
GBM1042-1H
Type
Microsatellite
Map
Hv-Consensus2006-Stein-1H49.5
Hv-DxR-Stein-1H49.66
[ Show Nearby Loci ]
Map Data
Barley, Consensus 2006, Stein
Barley, OWB, Stein2006
Probe
GBM1042