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GrainGenes Marker Report: GMS021

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Locus
GMS021
Type
Microsatellite
Synonym
SynonymGMS21
Chromosome
1H
Map
Hordeum-Consensus2005-SNP-1H26.437
[ Show all 8 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 8 ]
Species
Hordeum vulgare
Probe
GMS021
GMS21
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceStruss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
[ Show all 6 ]



Probe for Locus
GMS21
Locus
GMS0021
GMS021
GMS21
Reference
ReferenceHearnden PR et al. (2007) A genetic map of 1,000 SSR and DArT markers in a wide barley cross. Theoretical and Applied Genetics 115:383-391.
ReferenceStruss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
General Remarks
Annealing temperature = 55 deg C
Insert contains repeat (ga)17(ga)7
Type
SSR
PCR primers
5' CTATCACACGACGCAACATG
5' CCTGAGAAAGAAAGCGCAAC
CTATCACACGACGCAACATG
CCTGAGAAAGAAAGCGCAAC
SSR size
169



Probe
GMS021
Locus
GMS021
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceStruss D and Plieske J (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theoretical and Applied Genetics 97:308-315.
Type
SSR
PCR primers
CTATCACACGACGCAACATG
CCTGAGAAAGAAAGCGCAAC