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GrainGenes Marker Report: HAR35_16166

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Probe
HAR35_16166
Locus
POPA1_0217
POPA3_0830
Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Locus for Probe
POPA1_0217
Type
SNP
Synonym
Other name11_10217
BOPA1_11_10217
BOPA1_203-1128
Synonym11_10217
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H139.9
Hordeum-OPA-2009-5H153.51
Hordeum-OPA123-2008-5H153.51
Hordeum-OPAConsensus-2011-5H149.94
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16166
i_11_10217
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0217
[ Show all 11 ]



Locus for Probe
POPA3_0830
Type
SNP
Synonym
Synonym12_30830
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H153.51
Hordeum-OPA123-2008-5H153.51
Hordeum-OPAConsensus-2011-5H149.27
Hordeum-OWB-OPA2008-5H182.676
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_16166
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 3_0830
[ Show all 13 ]

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