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GrainGenes Marker Report: Hor1 (Hordeum)

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Gene
Hor1 (Hordeum)
Gene Class
C-Hordein
Hordeins
Locus
HOR-1
Hor1
HorC
Candidate Locus
Hor1
Reference
ReferenceEntwistle J (1988) Primary structure of a C hordein gene from barley Carlsberg Research Communications 53:247-258.
Gene Product
C hordein
Chromosome
1H
Chromosome Arm
1HS
Clone
lambda-hor1-14
lambda-hor1-17
pc hor1-3
pc P387
pc-919
Sequence
M36941
Data Source
Karakousis, Angelo96.10
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Locus Associated with Gene
HOR-1
Type
Gene
Chromosome
1H
Map
Hordeum-Heun-1H21.8
[ Show Nearby Loci ]
Map Data
Barley, PxN
Probe
Hor1
Associated Gene
Hor1 (Hordeum)
Gene Class
C-Hordein
Hordeins
Possible Orthologs
Hor1



Locus Associated with Gene
Hor1
Type
Gene
RFLP
Synonym
SynonymHor1 (Hordeum)
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Consensus-1H-24.2
[ Show all 27 ]
[ Show Nearby Loci ]
In QTL
QDp.BlE2-1H
[ Show all 7 ]
Map Data
Barley consensus
[ Show all 27 ]
2 Point Data
Hor1/Glu.c1
Mla6/Hor1
Probe
Hor 1&2
Hor1
pc P387
Associated Gene
Hor1 (Hordeum)
Candidate Gene
Hor1 (Hordeum)
Gene Class
C-Hordein
Hordeins
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceKleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of Hor1 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka,Nure x Tremois
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
HOR-1



Locus Associated with Gene
HorC
Type
Gene
Map
Hordeum-DxM-1H23.5
[ Show Nearby Loci ]
Map Data
Barley, Dicktoo x Morex
Associated Gene
Hor1 (Hordeum)
Gene Class
C-Hordein
Hordeins



Locus Candidate for Gene
Hor1
Type
Gene
RFLP
Synonym
SynonymHor1 (Hordeum)
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Consensus-1H-24.2
[ Show all 27 ]
[ Show Nearby Loci ]
In QTL
QDp.BlE2-1H
[ Show all 7 ]
Map Data
Barley consensus
[ Show all 27 ]
2 Point Data
Hor1/Glu.c1
Mla6/Hor1
Probe
Hor 1&2
Hor1
pc P387
Associated Gene
Hor1 (Hordeum)
Candidate Gene
Hor1 (Hordeum)
Gene Class
C-Hordein
Hordeins
Reference
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceKleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source
Blake, Tom05.04.19
Langridge, Peter J.
Remark
Number of populations contributing to the placement of Hor1 in the Barley, Consensus 2006 DArT maps = 2
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka,Nure x Tremois
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka
Possible Orthologs
HOR-1



Locus
Hor1 (Hordeum)
Synonym
SynonymHor1