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GrainGenes Marker Report: Hor5

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Locus
Hor5
Type
Gene
RFLP
Synonym
SynonymHor5 (Hordeum)
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Consensus-1H-34.9
[ Show all 14 ]
[ Show Nearby Loci ]
Map Data
Barley consensus
[ Show all 14 ]
Probe
Hor5
phor g-1
Associated Gene
Hor5 (Hordeum)
Candidate Gene
Hor5 (Hordeum)
Gene Class
gamma-Hordein
Hordeins
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceKleinhofs A et al. (1993) A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome Theoretical and Applied Genetics 86:705-712.
Data Source
Blake, Tom05.04.19
Remark
The Hor5 RFLP is a gene marker for the Hor5 gene.
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka



Probe for Locus
phor g-1
Locus
Hor5
Reference
ReferenceCameron-Mills V and Brandt A (1988) gamma-hordein Gene Plant Molecular Biology 11:449-461.
Linkage Group
Barley 5 (1H)
Source Gene Class
gamma-Hordein
Source Species
Hordeum vulgare
Insert Size
3.1
Clone Vector
pBR
Excision Enzyme
EcoRI
Clone Location
Kleinhofs, Andris
Clone Authority
Brandt, A.
Data Source
Kleinhofs, Andris96.05.08



Gene Associated with Locus
Hor5 (Hordeum)
Synonym
Other nameHrdF
SynonymHrdF
Gene Class
gamma-Hordein
Hordeins
Locus
Hor5
Candidate Locus
Hor5
Reference
ReferenceCameron-Mills V and Brandt A (1988) gamma-hordein Gene Plant Molecular Biology 11:449-461.
ReferenceShewry PR and Parmar S (1987) The HrdF (Hor5) locus encodes ni-type hordeins. Barley Genetics Newsletter 17:32-34.
Chromosome
1H
Clone
lambda_hor delta-1
Sequence
X13508
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Gene Candidate for Locus
Hor5 (Hordeum)
Synonym
Other nameHrdF
SynonymHrdF
Gene Class
gamma-Hordein
Hordeins
Locus
Hor5
Candidate Locus
Hor5
Reference
ReferenceCameron-Mills V and Brandt A (1988) gamma-hordein Gene Plant Molecular Biology 11:449-461.
ReferenceShewry PR and Parmar S (1987) The HrdF (Hor5) locus encodes ni-type hordeins. Barley Genetics Newsletter 17:32-34.
Chromosome
1H
Clone
lambda_hor delta-1
Sequence
X13508
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Probe
Hor5
Locus
Hor5
Reference
ReferenceCameron-Mills V and Brandt A (1988) gamma-hordein Gene Plant Molecular Biology 11:449-461.
Source Gene Class
gamma-Hordein
Data Source
Graner, Andreas94.03.08