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GrainGenes Marker Report: MWG835

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Locus
MWG835
Type
RFLP
STS
Synonym
SynonymMWG835A
MWG835B
Chromosome
5H
Map
Barley-Consensus2-5H31.9
[ Show all 6 ]
[ Show Nearby Loci ]
Map Data
Barley consensus 2
[ Show all 6 ]
Species
Hordeum vulgare
Probe
MWG835
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L9Oregon Wolfe Barleys x Vada,Igri x Franka
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Igri x Franka
Possible Orthologs
MWG835A
[ Show all 6 ]



Probe
MWG835
Locus
MWG835
[ Show all 7 ]
Reference
ReferenceMarcel TC et al. (2007) A high-density consensus map of barley to compare the distribution of QTLs for partial resistance to Puccinia hordei and of defence gene homologues. Theoretical and Applied Genetics 114:487-500.
Type
Genomic
STS
STS primers
5' TTCCCTATTCAAGCCATCAGCAAA
5' GTAACCCATAGATAGCATCTTGTG
STS size
565
Amplification Conditions
5 min at 94 deg C; 35 cycles with 30 sec at 94 deg C, 30 sec at 65 deg C, and 1 min at 72 deg C; and a final extension step of 7 min at 72 deg C
Sequence
AJ234580
MWG835-5
Insert Enzyme
PstI
Source Species
Hordeum vulgare
Clone Vector
Bluescript
Excision Enzyme
PstI
Clone Location
Graner, Andreas
Clone Authority
Graner, Andreas
Data Source
Graner, Andreas94.03.08
Niks, Rients E.2006.08
Marcel, Thierry C.2006.08
Kuenzel, Gottfried00.03



Locus for Probe
MWG835A
Type
CAPS
RFLP
Synonym
SynonymMWG835
Chromosome
1H
Map
Hordeum-Bins-1H11.3
[ Show all 11 ]
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 11 ]
Species
Hordeum vulgare
Probe
MWG835
MWG835A
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Remark
Number of populations contributing to the placement of MWG835A in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = L94 x Vada, Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : L94 x Vada; Oregon Wolfe Dom x Rec; Steptoe x Morex
Possible Orthologs
MWG835
[ Show all 6 ]



Locus for Probe
MWG835B
Type
RFLP
Synonym
SynonymMWG835
Chromosome
5H
Map
Hordeum-Bins-5H9.9
Hordeum-Consensus2005-SNP-5H9.058
Hordeum-QTLConsensus-Abiotic-5H9.06
Hordeum-QTLConsensus-Agronomic-5H9.06
Hordeum-StMo-SNP-5H4.04
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
Barley, Agronomic QTL Consensus
Barley, BinMap 2005
Barley, Consensus 2005, SNP
Barley, Steptoe x Morex, SNP
Probe
MWG835
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Possible Orthologs
MWG835
[ Show all 6 ]



Locus for Probe
Xmwg835-1A.1
Type
RFLP
Map
Tm-Dubcovsky2-1A-56.4
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
MWG835
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg920-1A.1 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous. Segregation data are listed under Xmwg920-1A.1
Possible Orthologs
MWG835
[ Show all 6 ]



Locus for Probe
Xmwg835-1A.2
Type
RFLP
Map
Tm-Dubcovsky2-1A-55.7
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
MWG835
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg920-1A.2 were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous. Segregation data are listed under Xmwg920-1A.2.
Possible Orthologs
MWG835
[ Show all 6 ]



Locus for Probe
Xmwg835-2A
Type
RFLP
Map
Tm-Dubcovsky2-2A5.6
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
MWG835
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg920-2A were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous. Segregation data are listed under Xmwg920-2A.
Possible Orthologs
MWG835
[ Show all 6 ]



Locus for Probe
Xmwg835-5A
Type
RFLP
Map
Tm-Dubcovsky2-5A-36.5
[ Show Nearby Loci ]
Map Data
T. monococcum, DV92 x G3116
Probe
MWG835
Remark
In the population 'T. monococcum, DV92 x G3116,' this locus and Xmwg920-5A were mapped with identical restriction fragments, so the corresponding clones are assumed to be homologous. Segregation data are listed under Xmwg920-5A.
Possible Orthologs
MWG835
[ Show all 6 ]

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