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GrainGenes Marker Report: Nir

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Gene
nir
Gene Product
ferredoxin-nitrite reductase precursor
Sequence
FJ527909
FJ527909_1.cds
FJ555239
FJ555239_1.cds



Locus
Nir
Type
Gene
RFLP
Synonym
SynonymNir (Hordeum)
Chromosome
6H
Chromosome Arm
6HL
Map
Barley-Consensus-6H23.6
[ Show all 11 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QAa.StMo-6H
Map Data
Barley consensus
[ Show all 13 ]
Probe
pCIB808
Associated Gene
Nir (Hordeum)
Candidate Gene
Nir (Hordeum)
Gene Class
Nitrite reductase
Reference
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceLi JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027.
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex



Probe for Locus
pCIB808
Locus
Nir
Reference
ReferenceLahners K et al. (1988) Molecular cloning of complementary DNA encoding maize nitrite reductase. Plant Physiology 88:741-746.
Linkage Group
6
Source Gene Class
Nitrite reductase
Source Species
Zea mays
Insert Size
1.85
Clone Vector
pUC
Excision Enzyme
EcoRI
Clone Location
Kleinhofs, Andris
Clone Authority
Rothstein, S.
Data Source
Kleinhofs, Andris96.05.08



Gene Associated with Locus
Nir (Hordeum)
Gene Class
Nitrite reductase
Locus
Nir
pCIB808
Candidate Locus
Nir



Gene Candidate for Locus
Nir (Hordeum)
Gene Class
Nitrite reductase
Locus
Nir
pCIB808
Candidate Locus
Nir