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GrainGenes Marker Report: PCR1

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Locus
Pcr1
Type
RFLP
Synonym
SynonympHvDF1
Chromosome
2H
Chromosome Arm
2HL
Map
Barley-Consensus-2H70.4
[ Show all 15 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QGpc.StMo-2H.3
QLg.StMo-2H.2
Map Data
Barley consensus
[ Show all 15 ]
Probe
pHvDF1
Candidate Gene
Pcr1 (Hordeum)
Reference
ReferenceWenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206.
ReferenceRodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source
Blake, Tom05.04.19
Remark
Number of populations contributing to the placement of Pcr1 in the Barley, Consensus 2006 DArT maps = 1
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex
Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex



Probe for Locus
pHvDF1
Locus
Pcr2
Pcr1
Pcr2-1H
Reference
ReferenceSchulz R et al. (1989) Nucleotide sequence of a complementary DNA coding for the NADPH-protochlorophyllide oxidoreductase PCR of barley Hordeum-vulgare L. and its expression in Escherichia-coli Molecular and General Genetics 217:355-361.
ReferenceSteinmuller K et al. (1986) The light-induced greening of barley Molecular Form and Function of the Plant Genome 83:277-290.
ReferenceApel K et al. (1983) The light-dependent control of chloroplast development in barley (Hordeum vulgare L.) Journal of Cellular Biochemistry 23:181-189.
Type
cDNA
Linkage Group
2
Source Gene Class
NADPH protochlorophyllide oxidoreductase
Source Gene
Pcr1 (Hordeum)
Source Species
Hordeum vulgare
Insert Size
0.524
0.6
Clone Vector
pBR
Excision Enzyme
PstI
Clone Location
Kleinhofs, Andris
Clone Authority
Apel, K.
Data Source
Kleinhofs, Andris96.05.08
Information Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Gene Candidate for Locus
Pcr1 (Hordeum)
Gene Class
NADPH protochlorophyllide oxidoreductase
Candidate Locus
Pcr1
Clone
pHvA4
pHvA7
pHvDF1
Info Source
Referencevon Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps : locus maps of complex genomes..



Probe
PCR1
Locus
Jrg1
Remarks
Clone of mRNA induced upon treatment with jasmonic acid.
Type
cDNA
Clone Location
Loebler, Marian
Clone Authority
Loebler, Marian
Data Source
Graner, Andreas96.11.14



Locus for Probe
Jrg1
Type
RFLP
Map
Hordeum-Graner2-2H62.1
[ Show Nearby Loci ]
Map Data
Barley, IxF
Probe
PCR1