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GrainGenes Marker Report: POPA1_0002

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Locus
POPA1_0002
Type
SNP
Synonym
Other name11_10002
BOPA1_10070-1435
BOPA1_11_10002
Synonym11_10002
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H61.5
Hordeum-OPA-2009-1H66.7
Hordeum-OPA123-2008-1H66.7
Hordeum-OPAConsensus-2011-1H64.44
Hordeum-OWB-OPA2008-1H76.415
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17380
i_11_10002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0002
[ Show all 11 ]



Probe for Locus
HAR35_17380
Locus
POPA1_0002
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10002
Locus
POPA1_0002
BOPA1_10070-1435
11_10002
BOPA1_11_10002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10002



Locus for Probe
11_10002
Type
SNP
Synonym
Other nameBOPA1_10070-1435
BOPA1_11_10002
POPA1_0002
SynonymPOPA1_0002
Species
Hordeum vulgare
Probe
i_11_10002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_10070-1435
Type
SNP
Synonym
Other name11_10002
BOPA1_11_10002
POPA1_0002
Species
Hordeum vulgare
Probe
i_11_10002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10002
Type
SNP
Synonym
Other name11_10002
BOPA1_10070-1435
POPA1_0002
Map
Barley-Core-2014_1H64.93
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.