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GrainGenes Marker Report: POPA1_0005

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Locus
POPA1_0005
Type
SNP
Synonym
Other name11_10005
BOPA1_10126-999
BOPA1_11_10005
Synonym11_10005
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H53.3
Hordeum-OPA-2009-3H61.44
Hordeum-OPA123-2008-3H61.44
Hordeum-OPAConsensus-2011-3H71.26
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16766
i_11_10005
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0005
[ Show all 11 ]



Probe for Locus
HAR35_16766
Locus
POPA1_0005
Synonym
SynonymABG398
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10005
Locus
POPA1_0005
AK372355
11_10005
BOPA1_10126-999
BOPA1_11_10005
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10005



Locus for Probe
AK372355
Chromosome
3H
Map
Barley_2012_AC3_genes_3H53.2578
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10005



Locus for Probe
11_10005
Type
SNP
Synonym
Other nameBOPA1_10126-999
BOPA1_11_10005
POPA1_0005
SynonymPOPA1_0005
Species
Hordeum vulgare
Probe
i_11_10005
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_10126-999
Type
SNP
Synonym
Other name11_10005
BOPA1_11_10005
POPA1_0005
Species
Hordeum vulgare
Probe
i_11_10005
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10005
Type
SNP
Synonym
Other name11_10005
BOPA1_10126-999
POPA1_0005
Map
Barley-Core-2014_3H59.86
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10005
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.