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GrainGenes Marker Report: POPA1_0012

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Locus
POPA1_0012
Type
SNP
Synonym
Other name11_10012
BOPA1_1040-279
BOPA1_11_10012
Synonym11_10012
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, 2012 9KSNP 2H55.9
Hordeum-OPA-2009-2H58.9
Hordeum-OPA123-2008-2H58.9
Hordeum-OPAConsensus-2011-2H67.08
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14266
i_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0012
[ Show all 12 ]



Probe for Locus
HAR35_14266
Locus
POPA1_0012
POPA3_0828
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10012
Locus
POPA1_0012
11_10012
BOPA1_1040-279
BOPA1_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10012



Locus for Probe
11_10012
Type
SNP
Synonym
Other nameBOPA1_1040-279
BOPA1_11_10012
POPA1_0012
SynonymPOPA1_0012
Species
Hordeum vulgare
Probe
i_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_1040-279
Type
SNP
Synonym
Other name11_10012
BOPA1_11_10012
POPA1_0012
Species
Hordeum vulgare
Probe
i_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10012
Type
SNP
Synonym
Other name11_10012
BOPA1_1040-279
POPA1_0012
Map
Barley-Core-2014_2H68.8
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10012
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.