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GrainGenes Marker Report: POPA1_0137

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Locus
POPA1_0137
Type
SNP
Synonym
Other name11_10137
BOPA1_11_10137
BOPA1_1630-1150
Synonym11_10137
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H54.4
Hordeum-OPA123-2008-3H54.4
Hordeum-OPAConsensus-2011-3H67.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_14838
i_11_10137
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0137
[ Show all 11 ]



Probe for Locus
HAR35_14838
Locus
POPA1_0137
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10137
Locus
AK359887
11_10137
POPA1_0137
BOPA1_1630-1150
BOPA1_11_10137
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10137



Locus for Probe
AK359887
Chromosome
3H
Map
Barley_2012_AC3_genes_3H51.204
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10137



Locus for Probe
BOPA1_1630-1150
Type
SNP
Synonym
Other name11_10137
BOPA1_11_10137
POPA1_0137
Species
Hordeum vulgare
Probe
i_11_10137
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10137
Type
SNP
Synonym
Other name11_10137
BOPA1_1630-1150
POPA1_0137
Map
Barley-Core-2014_3H58.31
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10137
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
11_10137
Type
SNP
Synonym
Other nameBOPA1_11_10137
BOPA1_1630-1150
POPA1_0137
SynonymPOPA1_0137
Chromosome
U
Species
Hordeum vulgare
Probe
i_11_10137
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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