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GrainGenes Marker Report: POPA1_0232

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Locus
POPA1_0232
Type
SNP
Synonym
Other name11_10232
BOPA1_11_10232
BOPA1_2124-984
Synonym11_10232
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H34.82
Hordeum-OPA123-2008-7H34.82
Hordeum-OPAConsensus-2011-7H29.05
Hordeum-OWB-OPA2008-7H31.837
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15303
i_11_10232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0232
[ Show all 10 ]



Probe for Locus
HAR35_15303
Locus
POPA1_0232
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10232
Locus
AK251126.1
11_10232
POPA1_0232
BOPA1_2124-984
BOPA1_11_10232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10232



Locus for Probe
11_10232
Type
SNP
Synonym
Other nameBOPA1_11_10232
BOPA1_2124-984
POPA1_0232
SynonymPOPA1_0232
Species
Hordeum vulgare
Probe
i_11_10232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
AK251126.1
Chromosome
7H
Map
Barley_2012_AC3_genes_7H28.7181
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf108g19
i_11_10232
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
BOPA1_2124-984
Type
SNP
Synonym
Other name11_10232
BOPA1_11_10232
POPA1_0232
Species
Hordeum vulgare
Probe
i_11_10232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10232
Type
SNP
Synonym
Other name11_10232
BOPA1_2124-984
POPA1_0232
Map
Barley-Core-2014_7H34.74
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.