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GrainGenes Marker Report: POPA1_0281

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Locus
POPA1_0281
Type
SNP
Synonym
Other name11_10281
BOPA1_11_10281
BOPA1_2338-1572
Synonym11_10281
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H55.2
Hordeum-OPA-2009-3H64.19
Hordeum-OPA123-2008-3H64.19
Hordeum-OPAConsensus-2011-3H73.3
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15500
i_11_10281
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0281
[ Show all 10 ]



Probe for Locus
HAR35_15500
Locus
POPA1_0281
Synonym
SynonymBCD366
cMWG680
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10281
Locus
POPA1_0281
11_10281
BOPA1_2338-1572
BOPA1_11_10281
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10281



Locus for Probe
11_10281
Type
SNP
Synonym
Other nameBOPA1_11_10281
BOPA1_2338-1572
POPA1_0281
SynonymPOPA1_0281
Species
Hordeum vulgare
Probe
i_11_10281
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_2338-1572
Type
SNP
Synonym
Other name11_10281
BOPA1_11_10281
POPA1_0281
Species
Hordeum vulgare
Probe
i_11_10281
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10281
Type
SNP
Synonym
Other name11_10281
BOPA1_2338-1572
POPA1_0281
Map
Barley-Core-2014_3H62.97
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10281
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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