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GrainGenes Marker Report: POPA1_0365

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Locus
POPA1_0365
Type
SNP
Synonym
Other name11_10365
BOPA1_11_10365
BOPA1_2751-2205
Synonym11_10365
Chromosome
3H
Chromosome Arm
3HO
Map
Barley, 2012 9KSNP 3H51.6
Hordeum-OPA-2009-3H55.57
Hordeum-OPA123-2008-3H55.57
Hordeum-OPAConsensus-2011-3H65.25
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15252
i_11_10365
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0365
[ Show all 11 ]



Probe for Locus
HAR35_15252
Locus
POPA1_0365
POPA2_0408
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10365
Locus
POPA1_0365
11_10365
BOPA1_2751-2205
BOPA1_11_10365
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10365



Locus for Probe
11_10365
Type
SNP
Synonym
Other nameBOPA1_11_10365
BOPA1_2751-2205
POPA1_0365
SynonymPOPA1_0365
Species
Hordeum vulgare
Probe
i_11_10365
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_2751-2205
Type
SNP
Synonym
Other name11_10365
BOPA1_11_10365
POPA1_0365
Species
Hordeum vulgare
Probe
i_11_10365
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10365
Type
SNP
Synonym
Other name11_10365
BOPA1_2751-2205
POPA1_0365
Map
Barley-Core-2014_3H58.31
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10365
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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