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GrainGenes Marker Report: POPA1_0422

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Locus
POPA1_0422
Type
SNP
Synonym
Other name11_10422
BOPA1_11_10422
BOPA1_3122-909
Synonym11_10422
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H52.47
Hordeum-OPA123-2008-2H52.47
Hordeum-OPAConsensus-2011-2H56.64
Hordeum-OWB-OPA2008-2H66.181
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_15511
i_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0422
[ Show all 11 ]



Probe for Locus
HAR35_15511
Locus
POPA1_0422
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10422
Locus
AK356209
11_10422
POPA1_0422
BOPA1_3122-909
BOPA1_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10422



Locus for Probe
AK356209
Chromosome
2H
Map
Barley_2012_AC3_genes_2H55.046
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10422



Locus for Probe
11_10422
Type
SNP
Synonym
Other nameBOPA1_11_10422
BOPA1_3122-909
POPA1_0422
SynonymPOPA1_0422
Species
Hordeum vulgare
Probe
i_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_3122-909
Type
SNP
Synonym
Other name11_10422
BOPA1_11_10422
POPA1_0422
Species
Hordeum vulgare
Probe
i_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10422
Type
SNP
Synonym
Other name11_10422
BOPA1_3122-909
POPA1_0422
Map
Barley-Core-2014_2H66.11
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10422
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.