Query (optional)   in Class  

GrainGenes Marker Report: POPA1_0636

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA1_0636
Type
SNP
Synonym
Other name12_10636
BOPA2_12_10636
Synonym12_10636
Chromosome
1H
Chromosome Arm
1HS
Map
Barley, 2012 9KSNP 1H5
Hordeum-OPA-2009-1H4.51
Hordeum-OPA123-2008-1H4.51
Hordeum-OPAConsensus-2011-1H5.41
Hordeum-OWB-OPA2008-1H8.949
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_16297
i_12_10636
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0636
[ Show all 12 ]



Probe for Locus
HAR35_16297
Locus
POPA1_0636
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_10636
Locus
POPA1_0636
MLOC_58866.1
12_10636
BOPA2_12_10636
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_10636



Locus for Probe
MLOC_58866.1
Chromosome
1H
Map
Barley_2012_AC3_genes_1H4.95751
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_12_10636
i_SCRI_RS_193700



Locus for Probe
12_10636
Type
SNP
Synonym
Other nameBOPA2_12_10636
POPA1_0636
SynonymPOPA1_0636
Species
Hordeum vulgare
Probe
i_12_10636
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_10636
Type
SNP
Synonym
Other name12_10636
POPA1_0636
Map
Barley-Core-2014_1H6.15
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_10636
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.