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GrainGenes Marker Report: POPA1_0637

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Locus
POPA1_0637
Type
SNP
Synonym
Other name12_10637
BOPA2_12_10637
Synonym12_10637
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H55.63
Hordeum-OPA123-2008-4H55.63
Hordeum-OPAConsensus-2011-4H62.81
Hordeum-OWB-OPA2008-4H54.441
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_16885
i_12_10637
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0637
[ Show all 11 ]



Probe for Locus
HAR35_16885
Locus
POPA1_0637
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_12_10637
Locus
AK249774.1
12_10637
POPA1_0637
BOPA2_12_10637
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_12_10637



Locus for Probe
AK249774.1
Chromosome
4H
Map
Barley_2012_AC3_genes_4H54.3201
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf57k17
i_12_10637
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
12_10637
Type
SNP
Synonym
Other nameBOPA2_12_10637
POPA1_0637
SynonymPOPA1_0637
Species
Hordeum vulgare
Probe
i_12_10637
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA2_12_10637
Type
SNP
Synonym
Other name12_10637
POPA1_0637
Map
Barley-Core-2014_4H54.95
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_12_10637
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.