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GrainGenes Marker Report: POPA1_0639

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Locus
POPA1_0639
Type
SNP
Synonym
Other name11_10639
BOPA1_11_10639
BOPA1_4336-2579
Synonym11_10639
Chromosome
4H
Chromosome Arm
4HL
Map
Barley, 2012 9KSNP 4H59.6
Hordeum-OPA-2009-4H65.05
Hordeum-OPA123-2008-4H65.05
Hordeum-OPAConsensus-2011-4H76.09
Hordeum-OWB-OPA2008-4H63.31
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_1741
i_11_10639
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0639
[ Show all 10 ]



Probe for Locus
HAR35_1741
Locus
POPA1_0639
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10639
Locus
POPA1_0639
MLOC_65690.1
11_10639
BOPA1_4336-2579
BOPA1_11_10639
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10639



Locus for Probe
MLOC_65690.1
Chromosome
4H
Map
Barley_2012_AC3_genes_4H59.6317
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
i_11_10639



Locus for Probe
11_10639
Type
SNP
Synonym
Other nameBOPA1_11_10639
BOPA1_4336-2579
POPA1_0639
SynonymPOPA1_0639
Species
Hordeum vulgare
Probe
i_11_10639
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_4336-2579
Type
SNP
Synonym
Other name11_10639
BOPA1_11_10639
POPA1_0639
Species
Hordeum vulgare
Probe
i_11_10639
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10639
Type
SNP
Synonym
Other name11_10639
BOPA1_4336-2579
POPA1_0639
Map
Barley-Core-2014_4H58.82
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10639
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.