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GrainGenes Marker Report: POPA1_0778

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Locus
POPA1_0778
Type
SNP
Synonym
Other name11_10778
BOPA1_11_10778
BOPA1_552-188
Synonym11_10778
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H155.6
Hordeum-OPA-2009-5H175.9
Hordeum-OPA123-2008-5H175.9
Hordeum-OPAConsensus-2011-5H166.65
Hordeum-OWB-OPA2008-5H221.476
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_141
i_11_10778
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
Marker name in barley Pilot OPA1 = 1_0778
[ Show all 11 ]



Probe for Locus
HAR35_141
Locus
POPA1_0778
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
Data Source
Close, Timothy J



Probe
i_11_10778
Locus
POPA1_0778
AK250137.1
11_10778
BOPA1_552-188
BOPA1_11_10778
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
Type
SNP
Sequence
i_11_10778



Locus for Probe
AK250137.1
Chromosome
5H
Map
Barley_2012_AC3_genes_5H155.556
[ Show Nearby Loci ]
Map Data
Barley_2012_AC3_genes
Species
Hordeum vulgare
Probe
FLbaf64f20
[ Show all 6 ]
Reference
ReferenceSato K et al. (2009) Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources. DNA Research 16:81-89.



Locus for Probe
11_10778
Type
SNP
Synonym
Other nameBOPA1_11_10778
BOPA1_552-188
POPA1_0778
Previous name11_0902
SynonymPOPA1_0778
Chromosome
5H
Map
Barley2012_9KSNPv2-5H155.6
[ Show Nearby Loci ]
In QTL
QAa.StMo-5H.2
Map Data
Barley, 2012 9KSNP v2
Species
Hordeum vulgare
Probe
i_11_10778
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_552-188
Type
SNP
Synonym
Other name11_10778
BOPA1_11_10778
POPA1_0778
Species
Hordeum vulgare
Probe
i_11_10778
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.



Locus for Probe
BOPA1_11_10778
Type
SNP
Synonym
Other name11_10778
BOPA1_552-188
POPA1_0778
Map
Barley-Core-2014_5H165.57
[ Show Nearby Loci ]
Map Data
Barley, USDA Core, 2014 Consensus
Species
Hordeum vulgare
Probe
i_11_10778
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.

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